Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1685
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 34 0.084
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 32 0.34
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 32 0.34
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 32 0.34
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 32 0.34
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 31 0.79
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 31 0.79
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 31 0.79
Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog (hedg... 29 3.2
Z73905-4|CAI91175.1| 536|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 29 4.2
Z68217-3|CAA92466.2| 466|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep... 27 9.7
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue... 27 9.7
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 34.3 bits (75), Expect = 0.084
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 77 LVDKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKGDKLEPLH-LALHHT 250
L + + I ++ P ++ GRI+GP GT + + +TG +++G+ ++ ALH T
Sbjct: 121 LTESIRIPVETYPT-YNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHSNKMYGNALHKT 178
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 77 LVDKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
+ +K+Y+ + P ++ GRILGP G + + +TG +++G
Sbjct: 205 ITEKIYVPKNEYPD-YNFVGRILGPRGMTAKQLEQDTGCKIMVRG 248
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 77 LVDKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
+ +K+Y+ + P ++ GRILGP G + + +TG +++G
Sbjct: 205 ITEKIYVPKNEYPD-YNFVGRILGPRGMTAKQLEQDTGCKIMVRG 248
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 77 LVDKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
L DKV+I + P + G ++GP G L+ + +ETG +++G
Sbjct: 303 LHDKVWIPQEQFPD-LNFVGLLIGPRGNTLKSLEAETGAKIIIRG 346
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 77 LVDKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
L DKV+I + P + G ++GP G L+ + +ETG +++G
Sbjct: 303 LHDKVWIPQEQFPD-LNFVGLLIGPRGNTLKSLEAETGAKIIIRG 346
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 83 DKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
+KV++ P ++ GRILGP G + + ETG +++G
Sbjct: 90 EKVFVPAKEHPD-YNFVGRILGPRGMTAKQLEQETGCKIMVRG 131
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 83 DKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
+KV++ P ++ GRILGP G + + ETG +++G
Sbjct: 132 EKVFVPAKEHPD-YNFVGRILGPRGMTAKQLEQETGCKIMVRG 173
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 83 DKVYIGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
+KV++ P ++ GRILGP G + + ETG +++G
Sbjct: 90 EKVFVPAKEHPD-YNFVGRILGPRGMTAKQLEQETGCKIMVRG 131
>Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical
protein H25K10.6 protein.
Length = 518
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 614 GVQVSNTNFTSLPIAPQL 667
G++V NTNFTSL PQL
Sbjct: 113 GIRVENTNFTSLSFFPQL 130
>AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 9 protein.
Length = 553
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 590 QLIPIVQPGVQVSNTNFTSLPIAPQLGLQQPN 685
Q+ P+ QP + F LP PQ GL QPN
Sbjct: 340 QVEPVTQPTPPPNPFVFAPLPPFPQFGLPQPN 371
>Z73905-4|CAI91175.1| 536|Caenorhabditis elegans Hypothetical
protein C32C4.7 protein.
Length = 536
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 146 LISFLLCQMRQVRYLSLCKLYLRAHQTYLMK 54
LIS L + V +L C L+ +H T+L K
Sbjct: 11 LISILFQNSKSVNFLVYCPLFAHSHHTFLAK 41
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 122 FDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
++ GRILGP G ++ + ETG ++G
Sbjct: 85 YNFVGRILGPRGMTVKQLEKETGCRIFVRG 114
>Z68217-3|CAA92466.2| 466|Caenorhabditis elegans Hypothetical
protein F58G6.4 protein.
Length = 466
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 281 WRKILLRRYERNWHNGALRKWRASAGHECSTTDINNNI 394
++ I RR +R W +G +KWRA T D + I
Sbjct: 395 YQNITKRREKRKWMSGLRKKWRAMRELRPETVDFYSAI 432
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 95 IGLDNAPAAFDIKGRILGPNGTNLEYIRSETGVVAVLKG 211
+ +D + GRILGP+G + I ++ V +++G
Sbjct: 143 VSIDGKKVKCNYIGRILGPSGMSARMIENQYDVTLLIRG 181
>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
homolog protein.
Length = 1846
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 335 AALHCASSARIVSIRFCANDLAAANASI 252
AA C A + S++FC DLAA N I
Sbjct: 1369 AAQICDGMAYLESLKFCHRDLAARNCMI 1396
>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
formation protein 2 protein.
Length = 1843
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 335 AALHCASSARIVSIRFCANDLAAANASI 252
AA C A + S++FC DLAA N I
Sbjct: 1366 AAQICDGMAYLESLKFCHRDLAARNCMI 1393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,136
Number of Sequences: 27780
Number of extensions: 277947
Number of successful extensions: 789
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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