Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1684X
(489 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 1e-33
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 103 8e-23
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 58 3e-09
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 56 1e-08
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 52 3e-07
SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0) 44 9e-05
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 40 0.001
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 40 0.001
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 37 0.010
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 34 0.072
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 33 0.17
SB_31103| Best HMM Match : CC (HMM E-Value=8.3) 29 2.7
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 28 3.6
SB_36855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24) 27 8.3
SB_48766| Best HMM Match : DUF303 (HMM E-Value=3.1e-08) 27 8.3
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 139 bits (337), Expect = 1e-33
Identities = 57/78 (73%), Positives = 69/78 (88%)
Frame = +1
Query: 256 AHLNFPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHT 435
A + FPKEYP RPP + F+++IWHPN+ KNG+VCISILHEPG+DK+GYEKA ERW P+HT
Sbjct: 384 ASMVFPKEYPQRPPTLTFISDIWHPNVHKNGEVCISILHEPGEDKYGYEKADERWRPIHT 443
Query: 436 VETILISVISMLAGPNDE 489
VETI++SVISMLA PNDE
Sbjct: 444 VETIMLSVISMLAEPNDE 461
Score = 77.4 bits (182), Expect = 6e-15
Identities = 30/48 (62%), Positives = 38/48 (79%)
Frame = +2
Query: 134 ELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKHI*IFPR 277
EL K PVEGFSAGL DD D+YKWE++++GPP T YE G+FK +FP+
Sbjct: 343 ELQKKPVEGFSAGLFDDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPK 390
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 103 bits (247), Expect = 8e-23
Identities = 45/81 (55%), Positives = 57/81 (70%)
Frame = +1
Query: 241 GRFL*AHLNFPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERW 420
G + AH++FP +YP PP +F+T++WHPNI ++GDVCISILH P DD E SERW
Sbjct: 1171 GGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYESGDVCISILHPPVDDPQSGELPSERW 1230
Query: 421 LPVHTVETILISVISMLAGPN 483
P V TIL+SVIS+L PN
Sbjct: 1231 NPTQNVRTILLSVISLLNEPN 1251
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +2
Query: 134 ELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKHI*IFPRN 280
+L + PVEGF+ + D+++ ++W+V I GPP TLY GG+FK FP +
Sbjct: 1135 KLTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHD 1183
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 262 LNFPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVE 441
+ P+ YP PP+++FVT I+HPNID +G +C+ L P W P +
Sbjct: 19 IQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP---------PKGMWKPALNIS 69
Query: 442 TILISVISMLAGPNDE 489
++L +++ ++A PN +
Sbjct: 70 SVLSTILILMAEPNPD 85
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +1
Query: 268 FPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETI 447
FP EYP +PP++ F T+I+HPNID+ G VC+ I+ + E W P E +
Sbjct: 48 FPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPII------------SPENWKPATKTEQV 95
Query: 448 LISVISMLAGPNDE 489
+ ++++++ P E
Sbjct: 96 IQALLALVHDPEPE 109
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 51.6 bits (118), Expect = 3e-07
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +1
Query: 283 PLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVI 462
P PP+++FVT I+HPNID +G +C+ L P W P + ++L +++
Sbjct: 40 PFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP---------PKGMWKPALNISSVLSTIL 90
Query: 463 SMLAGPNDE 489
++A PN +
Sbjct: 91 ILMAEPNPD 99
>SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0)
Length = 446
Score = 43.6 bits (98), Expect = 9e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +1
Query: 394 GYEKASERWLPVHTVETILISVISMLA 474
GYE ++ERW PV +VE IL+SVISMLA
Sbjct: 2 GYESSAERWSPVQSVEKILLSVISMLA 28
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 40.3 bits (90), Expect = 8e-04
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Frame = +1
Query: 241 GRFL*AHLNFPKEYPLRPPRMKFVTE-----IWHPNIDKNGDVCISIL 369
G F + P +YP+RPPR+K +T ++PN+ +NG VC+SI+
Sbjct: 27 GGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYRNGKVCLSII 74
Score = 34.3 bits (75), Expect = 0.055
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +2
Query: 179 DDNDIYKWEVLIIGPPDTLYEGGFF 253
D +DI K LI GP DT YEGGFF
Sbjct: 6 DKDDIPKIHALITGPFDTPYEGGFF 30
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 134 ELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFF 253
E+ +P SAG D D+Y+W I+GPP ++YEGG F
Sbjct: 146 EITLDPPPNCSAGPKGD-DLYEWYSTILGPPGSVYEGGVF 184
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 134 ELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFF 253
E+ +P SAG D D+Y+W I+GPP ++YEGG F
Sbjct: 106 EITLDPPPNCSAGPKGD-DLYEWYSTILGPPGSVYEGGVF 144
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 37.5 bits (83), Expect = 0.006
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +1
Query: 295 PRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLA 474
PR F+T+I+HPN+ KNG++C++ L + W P ++ +L++V +L
Sbjct: 144 PRF-FLTKIFHPNVAKNGEICVNTL-------------KKDWKPDLGIKQVLLTVKCLLI 189
Query: 475 GPNDE 489
PN E
Sbjct: 190 VPNPE 194
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 36.7 bits (81), Expect = 0.010
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 274 KEYPLRPPRMKFVTEIWHPNID-KNGDVCISILHE 375
++YP PP + V I+HPN+D +G VC+S+L +
Sbjct: 62 EDYPNTPPVPRCVNNIYHPNMDLDDGSVCLSLLDD 96
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 33.9 bits (74), Expect = 0.072
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 164 SAGLIDDNDIYKWEVLIIGPPDTLYEGGFF 253
SAG D +Y+W I+GPP ++YEGG F
Sbjct: 43 SAGPKGDK-LYEWYSTILGPPGSVYEGGVF 71
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 143 KNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKHI*IFP 274
+N E + A ++DN +++W + GPPDT + GG + I P
Sbjct: 23 RNATELYHAQPLEDN-LFEWHFTVRGPPDTEFAGGRYHGRIILP 65
Score = 31.1 bits (67), Expect = 0.51
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 271 PKEYPLRPPRMKFVTEIWHPNIDKNGDVCISI-LHEPGDDKWGYEKASERWLPVHTVETI 447
P EYP++PP + +T I K +C+S+ H P E W P ++ T+
Sbjct: 65 PPEYPMKPPSIMLLTPNGRFEIGKK--ICLSMSAHHP-----------ETWQPSWSIRTV 111
Query: 448 LISVISML 471
L+++I +
Sbjct: 112 LMAIIGFM 119
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 277 EYPLRPPRMKFVTEIWHPNIDKNGDVCISILHE 375
+YP P + T+I+HPN+D VC+S+L +
Sbjct: 63 DYPNVAPSINCKTKIYHPNMDGYDGVCMSLLDD 95
>SB_31103| Best HMM Match : CC (HMM E-Value=8.3)
Length = 93
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 370 EVLICRHHHFYQYLDAIFQSQISSGVVSKDIPWEN 266
+VLI H H Y+ L ++ Q+ +G SK+ P+ N
Sbjct: 3 DVLIWAHEHSYEKLFRVYNQQMCNG--SKEAPYTN 35
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 185 NDIYKWEVLIIGPPDTLYEGGFFKHI*IFP 274
+++++W + GPPDT + GG + I P
Sbjct: 1 DNLFEWHFTVRGPPDTEFAGGRYHGRIILP 30
>SB_36855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 370 EVLICRHHHFYQYLDAIFQSQISSGVVSKDIPWEN 266
+VLI H H Y+ L ++ Q+ +G SK+ P+ N
Sbjct: 3 DVLIWAHEHSYEKLFPVYNRQMCNG--SKEAPYTN 35
>SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 16 NSASHLLSKNHLFRVFRVNFTIVINVRXTVFAFIKKAIS*TEQKPSRRLF 165
+ A + +KN +F + ++I T+F F KAI TE K SR++F
Sbjct: 255 DQACWIANKNANLCIFGLPVALMILFNFTLFIFTVKAIRVTE-KQSRKIF 303
>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
Length = 48
Score = 27.1 bits (57), Expect = 8.3
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +1
Query: 415 RWLPVHTVETILISVISMLAGPNDE 489
+W P + T+L+S+ ++L+ PN +
Sbjct: 2 KWSPALQIRTVLLSIQALLSAPNPD 26
>SB_48766| Best HMM Match : DUF303 (HMM E-Value=3.1e-08)
Length = 198
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -1
Query: 180 SIKPAEKPSTGFLFSSA--NCFFNKSEDCGSDINYNCEIYPEDTKQMIFRQKMAGRVLS 10
+I+ A+ G++ +S+ N F + D G+ + I+P D + + FR +AGR ++
Sbjct: 100 AIRWAQTADQGYVPNSSMRNVFMAVAMDLGNATSPYGSIHPTDKRDVGFRLALAGRAIA 158
>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 140 NKNPVE-GFSAGLIDDNDIYKWEVLIIGPP 226
NKN GF L DDND Y W V + PP
Sbjct: 230 NKNITHYGFWLCLRDDNDDYHWTVENVIPP 259
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,356
Number of Sequences: 59808
Number of extensions: 317669
Number of successful extensions: 804
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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