Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1684X
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 308 NFIRGGLKGYSLGKFKCA*RNLPRI 234
           +F+R  L    +   +CA R+ PR+
Sbjct: 37  HFVRASLSNLDMSVLECADRSAPRV 61


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 308 NFIRGGLKGYSLGKFKCA*RNLPRI 234
           +F+R  L    +   +CA R+ PR+
Sbjct: 127 HFVRASLSNLDMSVLECADRSAPRV 151


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 283 PLRPPRMKFVTEIWHPNIDKNGDVCISI 366
           PL    +  VT IWH N+    D  I I
Sbjct: 394 PLSSTGLAQVTGIWHSNLTTPDDPDIQI 421


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 114 KSEDCGSDINYNCEIY 67
           ++EDCGS I Y  +++
Sbjct: 316 RNEDCGSAIAYVSDVF 331


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 158 GFSAGLIDDNDIYKWEVLII 217
           G    LI D D+  WEV I+
Sbjct: 114 GLIRDLIVDRDVPTWEVNIL 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,235
Number of Sequences: 438
Number of extensions: 2775
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)