Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1679
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 41 0.001
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 37 0.016
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 30 1.9
09_04_0652 - 19227686-19227926,19229368-19232294 29 2.5
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 29 3.3
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 29 3.3
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 29 4.3
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410... 28 5.7
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 27 9.9
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 27 9.9
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 258 IGGFEKECSECKKVAKTEVLDPDFEEDLSLWMCLRCGTQLCGRTRNKHALNHF-NTPHSD 434
IGG ++ C C+K +K + +LW+C+ CG CGR HA+ H+ T H
Sbjct: 233 IGG-DQVCQFCQKQSKNPTCSV-CQTSGNLWICIICGFVGCGRYEEGHAIRHWKETQH-- 288
Query: 435 CYAL 446
CY+L
Sbjct: 289 CYSL 292
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 SLWMCLRCGTQLCGRTRNKHALNHF-NTPHSDCYAL 446
+LW+C+ CG CGR + HA+ H+ T H CY+L
Sbjct: 217 NLWICVICGHVGCGRYKGGHAIEHWKETQH--CYSL 250
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +1
Query: 88 HM*TRLRTQDTMVK-----KKRQSDPGENGDESTESCEENV 195
H+ + L T++T+ + KKRQSD G+ D T EE+V
Sbjct: 353 HLKSLLETKETIERHRKSLKKRQSDKGDGSDAETSMSEEDV 393
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +3
Query: 333 EDLSLWMCLRCGTQLCGRTRN-----KHALNHFNTPHSDCYALAANSTTWEIYCYNCNNE 497
E +W+CL CG CG + HA H A + T +C +C E
Sbjct: 131 EKSDMWVCLDCGRHFCGGEVDVTKPYGHARRHAKQDRHWWAARFDDPTV--AFCLSCEKE 188
Query: 498 VTASQPK 518
V+ P+
Sbjct: 189 VSIEMPR 195
>02_05_0982 - 33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 151 GENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQKL 309
G +G SC+ N S C + + D K +K DL +N S + +Q L
Sbjct: 1207 GSDGS-CASSCQRNSSSGCHAIQELADAIISAKQLKVLDLSRNGLSEEDIQSL 1258
>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 124 VKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQ 303
V + ++ G +G SC+ N S C + + D K +K DL +N S + +Q
Sbjct: 1242 VHEDTRAATGPDGS-CASSCQRNSSSGCHAIQELADAIISAKQLKVLDLSRNGLSEEDIQ 1300
Query: 304 KL 309
L
Sbjct: 1301 SL 1302
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 399 HALNHFNTPHSDCYALAANSTTWEIYCYNCNNEVTAS 509
H H N P + Y +A T+++ CY N+E T S
Sbjct: 422 HVYYHQNNPLYNGYPVAPQHTSFDQMCYATNSEQTMS 458
>09_04_0075 -
14340458-14340551,14340643-14340814,14340895-14341066,
14341617-14341811,14341886-14342053,14342150-14342335,
14342797-14342881,14342896-14343206,14344222-14344569
Length = 576
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Frame = +3
Query: 309 EVLDPDFEE-------DLSLWMCLRCGTQLCGRTRNKHALNH 413
+VLD DFE+ +L+++ CL CG GR HA H
Sbjct: 116 QVLDFDFEKFCSISLSNLNVYACLVCGKYYQGRGLKSHAYTH 157
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 196 KSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKK 297
+S P A A+ ++R +KAI +++K+N + K
Sbjct: 805 RSETPSTANAIGISRNRKAITCQEIKENESALDK 838
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = -1
Query: 357 NTSTRTNLLQNLDQVPQFLQLFCTLNILFQ------ILRFYSFL*PSQIYCFRDVRTCGF 196
NTST+ N+L L+ P+ L ++F+ I R + P + Y FR R+ F
Sbjct: 131 NTSTQENILAILEFNPEGLPQGWVKEVVFRKTHTGRIRRDRHYTDPIKSYVFRTKRSAAF 190
Query: 195 YV 190
YV
Sbjct: 191 YV 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,941,682
Number of Sequences: 37544
Number of extensions: 265055
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -