Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1679
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)         29   2.5  
SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08)             29   4.4  
SB_26099| Best HMM Match : DUF1610 (HMM E-Value=0.45)                  28   7.7  
SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)                28   7.7  

>SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
 Frame = +1

Query: 124 VKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLK-KAIKSEDLKKNVQSAKKL 300
           +K  RQ    +   ++  SC E V+  CP+ AK + L RL  + I    +          
Sbjct: 218 LKHFRQDQKPKGAGQTCLSCPEEVERLCPYSAKKIYLDRLSPREIPHWPMSVVCDVEDHP 277

Query: 301 QKLRYLIQILKKICPCG-CVYXVARNSVAEHAINM 402
           +  R+ +    K  P G CVY    + V    +NM
Sbjct: 278 KGYRHALTETLKSGPYGKCVYECDNDVVDHQVVNM 312


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 279 CSECKKVAKTEVLDPDFEEDLSLWMCLRCGTQLCGRT---RNKHALNH 413
           C  C K  K+ V      E+L  W C+RCG      T   ++K AL H
Sbjct: 303 CGVCFKSFKSRVSLEQHSEELLHWACVRCGKFFTSPTALGQHKLALGH 350


>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
          Length = 647

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 375 VACHXVNTSTRTNLLQNLDQVP 310
           +ACH ++TST +N  Q++ Q P
Sbjct: 597 IACHAISTSTLSNFFQSVQQPP 618


>SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08)
          Length = 272

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 500 YCITAKKLHECIEYLKKXFLASSTVKSLPP--IELPFETKDFSIIELYQRIPI 652
           YC++   LH C + L K F     V  + P  I +P +  +    E+ + +P+
Sbjct: 164 YCVSKAGLHMCTQALAKDFAPDVRVNGVSPGFIMVPGDWSEEKEAEILKNVPL 216


>SB_26099| Best HMM Match : DUF1610 (HMM E-Value=0.45)
          Length = 110

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
 Frame = +3

Query: 312 VLDPDFEE-------DLSLWMCLRCGTQLCGRTRNKHALNH 413
           VLD DFE+        ++++ CL CG  L GR R+ +A  H
Sbjct: 54  VLDFDFEKLCSISLSHINVYACLICGKILPGRGRHSYAYTH 94


>SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 609 VSNGNSIGGNDLTVLLARNXFLRYSMHSWSF 517
           VSNG S  G+  T+L A    L + +H+W +
Sbjct: 45  VSNGLSYNGSKRTLLPAELSALHFKLHAWIY 75


>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
          Length = 496

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 106 RTQDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTR 240
           + +D   KKK+    GEN D + E  ++N K A    +K   LTR
Sbjct: 19  KEKDKKGKKKKGEQNGENNDSAKEESKKNKKEAKEAKSKTT-LTR 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,776,443
Number of Sequences: 59808
Number of extensions: 324521
Number of successful extensions: 1094
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)