Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1679
         (657 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            32   0.018
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   2.8  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   4.9  
AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakini...    24   4.9  
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    23   6.4  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   6.4  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   6.4  
AY341195-1|AAR13759.1|  294|Anopheles gambiae laminin protein.         23   8.5  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 31.9 bits (69), Expect = 0.018
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 232  LTRLKK-AIKSEDLKKNVQSAKKLQKLRYLIQILKKICPCGCV-YXVARNSVAEHAI 396
            L RL K  I   D  K+++   K + L+++ QI +K+     + Y V+RN V +HAI
Sbjct: 2881 LNRLDKFVINKMDKIKDMKMVLKEKNLKFITQIKEKVGKMKQIGYHVSRNDVTQHAI 2937


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 570 VLLARNXFLRYSMHSWSFLAVMQ*LHYYSCNSR 472
           V LA +  + Y M   + LA M  LHYY  +S+
Sbjct: 122 VRLAGDGAVTYGMRFTTTLACMMDLHYYPLDSQ 154


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 285 ECKKVAKTEVLDPDFEEDLSLWMCLRCGT 371
           E  KV +  +LD D+  +  +WM L C +
Sbjct: 376 EGMKVFEELLLDADWSVNAGMWMWLSCSS 404


>AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakinin
           GPCR protein.
          Length = 634

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 131 FLTIVSCVRNRVYIC 87
           FL + SC RNR+ IC
Sbjct: 534 FLGVFSCYRNRMPIC 548


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 336 DLSLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCYALAA 452
           D ++W      T  C RTR   A+   +TP S   A A+
Sbjct: 22  DCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQAS 60


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 457 PPPGKSTVTTVIMKLLHH 510
           PPP K T+   + +LLH+
Sbjct: 331 PPPAKETIHFALPELLHN 348


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 402  ALNHFNTPHSDCYALAANSTTWEIYCYNCNNEVT 503
            A N +        AL ++S   + Y YNCN + T
Sbjct: 1489 AANIYEPARGSVSALLSSSGLMKRYLYNCNGKRT 1522


>AY341195-1|AAR13759.1|  294|Anopheles gambiae laminin protein.
          Length = 294

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +1

Query: 112 QDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSA 291
           +D   K +  +   EN   + E  E  +  A      AVD  +  K  K +  K   +  
Sbjct: 173 EDLATKMRDHAQLLENVGTNIELAETLLDRASLQKEDAVDALKQLKYAKEQAEKAVAEGD 232

Query: 292 KKLQKLRYLIQIL 330
             LQK  Y  Q L
Sbjct: 233 GTLQKANYTYQTL 245


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,034
Number of Sequences: 2352
Number of extensions: 11289
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)