Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1679
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical ...    51   6e-07
U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical pr...    38   0.005
U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical pr...    38   0.005
U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical pr...    36   0.025
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    33   0.24 
U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U88177-3|AAB42292.1|  191|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    28   6.7  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    28   6.7  

>AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical
           protein Y71A12B.9 protein.
          Length = 699

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 21/51 (41%), Positives = 33/51 (64%)
 Frame = +3

Query: 351 MCLRCGTQLCGRTRNKHALNHFNTPHSDCYALAANSTTWEIYCYNCNNEVT 503
           MCL CG  LCGR  + HAL+HF       + +  +  ++E+YCY+C++EV+
Sbjct: 64  MCLTCGRILCGRNDSGHALHHF---EETSHPVVIDCISFELYCYSCDDEVS 111


>U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical protein
            F41H10.6c protein.
          Length = 957

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 345  LWMCLRCGTQLCGRTRNKHALNHFNTPHSDCYALAANSTTWEIYCYNCNNEV 500
            +W CL C    CGR  N+HA+ H     S  + +A +     ++CY C++ V
Sbjct: 886  VWTCLTCYKYNCGRFVNEHAMMHH---LSSSHPMALSMADLSVWCYPCDSYV 934


>U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical protein
            F41H10.6b protein.
          Length = 955

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 345  LWMCLRCGTQLCGRTRNKHALNHFNTPHSDCYALAANSTTWEIYCYNCNNEV 500
            +W CL C    CGR  N+HA+ H     S  + +A +     ++CY C++ V
Sbjct: 884  VWTCLTCYKYNCGRFVNEHAMMHH---LSSSHPMALSMADLSVWCYPCDSYV 932


>U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical
           protein EEED8.16 protein.
          Length = 590

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +3

Query: 270 EKECSECKKVAKTEVLDPDFEEDLS----LWMCLRCGTQLCGRTRNKHALNHFN-TPHS 431
           +  C  C+ V   EV+      D      LW+CL CG   CGR   +HA  H+  T H+
Sbjct: 290 DNTCPVCRYVQSPEVVAEQRCNDCGMSNDLWICLICGNIGCGRYAEQHAQRHWELTSHT 348


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = +3

Query: 312 VLDPDFEEDLSL-------WMCLRCGTQLCGRTRNKHALNH-FNTPHSDCYALAANSTTW 467
           VLD DFE+  S+       + C+ CG    GR  N HA  H   T H     +  N  T 
Sbjct: 146 VLDFDFEKQCSVSLSHQNVYACMVCGKYFQGRGTNTHAYTHALETDHH----VFLNLQTL 201

Query: 468 EIYCYNCNNEV 500
           + YC   N EV
Sbjct: 202 KFYCLPDNYEV 212


>U10414-9|AAA19072.1|  712|Caenorhabditis elegans Hypothetical
           protein F42A10.1 protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +1

Query: 151 GENGDESTES-CEENVKSACPHVAKAVDLTRLKKAIKSED-----LKKNVQSAKKLQKLR 312
           GE+   S E+ CE   K+AC  + K +    L KAIK ++     L++ V  A + Q   
Sbjct: 48  GEHLQASVENLCEVGAKNACQQLLKLLHGDNLPKAIKQQEATTKRLEQTVDMAAENQNFE 107

Query: 313 YLIQILK 333
            L  I K
Sbjct: 108 ALQSIWK 114


>U88177-3|AAB42292.1|  191|Caenorhabditis elegans Hypothetical
           protein F53E10.6 protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +1

Query: 127 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQK 306
           +++  S  GE+G+E   S +     A   VA      R KK IK   L K  QS KK  K
Sbjct: 20  EREEMSSGGESGEEGPSSVDGGAGDADETVAFPAIERRKKKVIKK--LTKKEQSLKKSVK 77

Query: 307 LRYLIQI 327
             Y I++
Sbjct: 78  -EYRIKL 83


>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 376 SVAEHAINML*ITSTRLILTAMLSLLIPPPG--KSTVTTVIMKLLHHSQKTP*VHRVPQE 549
           S + H  N+L +     + T+M   +   PG   S V+ +  K+L+H ++   V +VP  
Sbjct: 239 SSSTHCRNLLNLNPKMPVFTSMFGKMKQEPGVESSHVSNLRQKILNHRKRGKEVQKVPSS 298

Query: 550 XVP 558
             P
Sbjct: 299 PPP 301


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 166 ESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKK 297
           +S ES E + +  CP  + A      KKA K  D    V+ AKK
Sbjct: 715 KSRESAERDDEDYCPSSSTAYKKKYTKKAKKDNDDAPKVKKAKK 758


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 166 ESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKK 297
           +S ES E + +  CP  + A      KKA K  D    V+ AKK
Sbjct: 728 KSRESAERDDEDYCPSSSTAYKKKYTKKAKKDNDDAPKVKKAKK 771


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,304
Number of Sequences: 27780
Number of extensions: 254127
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)