Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1678X
         (354 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   3.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   3.7  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   3.7  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    20   6.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    20   6.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 KKKRQSDPGENGDESTESC 182
           K+KR+ DP + G+ S + C
Sbjct: 557 KRKRKQDPADGGN-SMKKC 574


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 KKKRQSDPGENGDESTESC 182
           K+KR+ DP + G+ S + C
Sbjct: 449 KRKRKQDPADGGN-SMKKC 466


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 299 QLFCTLNILFQILRFNSFL*PSQIYCFRDVRTC 201
           Q+F T  + F IL + SF     ++C      C
Sbjct: 131 QIFITCELFFVILLWISFFLNFMLHCNNTTWRC 163


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +1

Query: 46  SLKPFYCNIYYYFNICKRD 102
           SLK + C +  ++  C+R+
Sbjct: 49  SLKQYTCELKLWWEFCQRN 67


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +2

Query: 140 ERPWRKW 160
           E+PWR W
Sbjct: 243 EKPWRPW 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,857
Number of Sequences: 336
Number of extensions: 1153
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)