Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1678X
(354 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 27 1.1
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.1
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos... 26 1.5
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 26 2.0
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 24 6.0
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 24 6.0
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 24 6.0
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 24 7.9
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 24 7.9
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 24 7.9
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 26.6 bits (56), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 257 IGGFEKECSECKKVAKTAVLDPDFEEDLSL 346
+GG EK+ E K+V + V P+ E L +
Sbjct: 147 VGGLEKQIKEIKEVIELPVKHPELFESLGI 176
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 26.6 bits (56), Expect = 1.1
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 31 LIIVVSLKPFYCNIYYYFNICKRDYVHKTQWLKKRDRATLEKMET 165
L++ ++ P+ N YY + + + + W+ K D +L+ T
Sbjct: 203 LVMFQAINPYLNNNYYTHDTVDTNALEENSWITKLDMQSLQHFRT 247
>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 1.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 210 HVAKAVDLTRLKKAIKSEDLKKNVQSA 290
H+A++ D T +IK + LKK+V+ A
Sbjct: 231 HIAESPDCTESLASIKEDKLKKSVEMA 257
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 2.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 43 VSLKPFYCNIYYYFNICKRDYVHKTQWLKK 132
+SLK +Y YY K YV T W+ K
Sbjct: 75 LSLKAYYGMDYYLHKNVKAVYVIHTDWMSK 104
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 24.2 bits (50), Expect = 6.0
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 168 STESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQKLRYLIQILKKI 338
S + ++ K CP V++ RL K EDL+ + K L + L+K+
Sbjct: 1127 SKKKLRQDEKFTCPICDYRVEIPRLSNRPKLEDLQSLYKDVKLLPFQPKETETLRKV 1183
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 123 VKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAK 293
++K+ ++D ++ E + CE+ ++S VAKA ++ + E+ K + AK
Sbjct: 80 LRKRLRNDVLKDLAEEIQGCEKKLESLYEEVAKA-KAKAVEDQLALEEADKEAKKAK 135
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 183 EENVKSACPHVAKAVDLTRLKKAIKSEDLKK 275
+EN ++ P + K+ D + K++IKS++ KK
Sbjct: 30 KENESTSLPRLPKSEDESIPKQSIKSKNKKK 60
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 23.8 bits (49), Expect = 7.9
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +3
Query: 87 HM*TRLRTQDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSED 266
H L +++ K++R S+ + +T + E+ S + A VDL ++ A
Sbjct: 576 HSKHNLFRKNSFPKRRRLSNSDTPSETTTPNNEQEQVS---NQANKVDLNKIISAAMESV 632
Query: 267 LKKNVQSAKKLQKLR 311
+KNV A+K ++ R
Sbjct: 633 NQKNVLKAQKEEEER 647
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 7.9
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 126 KKKRQSDPGENGDESTESCEE--NVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKL 299
KK ++ + D + S EE N+ + ++ +D +K +K+E KKN + KK
Sbjct: 527 KKNKKGKHTQIEDPTAASKEELENLVREDENDSEQLDHFDMKSILKAEKFKKNRKLKKKA 586
Query: 300 QKLRYL 317
L L
Sbjct: 587 SNLEGL 592
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 23.8 bits (49), Expect = 7.9
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +3
Query: 99 RLRTQDTMVKKKRQSDP----GENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSED 266
R+ Q+ +K K S+P N ST + P V A A+KS
Sbjct: 695 RMEKQNENLKSKVASNPVSQTSTNAKASTPALASGSIWGSPSVINA--WANKPAALKSPL 752
Query: 267 LKKNVQSAKKLQ 302
+KKN+Q A+ Q
Sbjct: 753 IKKNIQQAELAQ 764
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,177,085
Number of Sequences: 5004
Number of extensions: 18300
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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