Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1678X
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 30 0.60
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 29 1.1
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 29 1.1
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 27 3.2
11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836 27 4.2
04_04_0283 - 24132112-24132189,24132227-24132745 27 4.2
12_01_0389 + 3067808-3069121 27 5.6
08_01_0434 + 3809681-3810016,3810039-3811100 26 9.8
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424... 26 9.8
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 26 9.8
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202... 26 9.8
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 29.9 bits (64), Expect = 0.60
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +3
Query: 87 HM*TRLRTQDTMVK-----KKRQSDPGENGDESTESCEENV 194
H+ + L T++T+ + KKRQSD G+ D T EE+V
Sbjct: 353 HLKSLLETKETIERHRKSLKKRQSDKGDGSDAETSMSEEDV 393
>02_05_0982 - 33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 150 GENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQKL 308
G +G SC+ N S C + + D K +K DL +N S + +Q L
Sbjct: 1207 GSDGS-CASSCQRNSSSGCHAIQELADAIISAKQLKVLDLSRNGLSEEDIQSL 1258
>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 123 VKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQ 302
V + ++ G +G SC+ N S C + + D K +K DL +N S + +Q
Sbjct: 1242 VHEDTRAATGPDGS-CASSCQRNSSSGCHAIQELADAIISAKQLKVLDLSRNGLSEEDIQ 1300
Query: 303 KL 308
L
Sbjct: 1301 SL 1302
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 195 KSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKK 296
+S P A A+ ++R +KAI +++K+N + K
Sbjct: 805 RSETPSTANAIGISRNRKAITCQEIKENESALDK 838
>11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836
Length = 526
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +3
Query: 135 RQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQKLRY 314
R++D E+G S + ++SAC + + T + +I+ + L V K+ + R+
Sbjct: 215 RKNDVAEDGVWSNQKAIRRLRSACERAKRLLSFT-AQTSIEVDSLHDGVDFCAKMSRSRF 273
>04_04_0283 - 24132112-24132189,24132227-24132745
Length = 198
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 129 KKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKL 299
KK S+ G + + ++N+ A V++ D +++ + K+N + AKKL
Sbjct: 132 KKENSEDGWTQEPNPGQAKDNLGEAASRVSEQQDRRSGASSLELGETKRNSRQAKKL 188
>12_01_0389 + 3067808-3069121
Length = 437
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 177 SCEENVKSACPHVAKAVDLTRLKKAIKSE-DLKKNVQSAKKLQKLRYLIQILKKICPC 347
+C AC + A AVD ++AI+ E D + Q+ + ++ +L ++C C
Sbjct: 277 ACRARASGACRNRALAVDAGAAREAIELELDAWSSPQAPGGRRATEAVMALLAELCAC 334
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +1
Query: 58 FYCNIYYYFNICKRDYVHKTQWLKKRDRATLEKMETNQQSLAKRT 192
F C +YY+ + D H +++ ++R TL ++ ++ L + T
Sbjct: 93 FNCTVYYHIDRFIDDEHHPSEFGRRRSNYTLRNIDMDRFFLPRPT 137
>04_04_1121 -
31041629-31041793,31041891-31042022,31042255-31042425,
31042521-31042622,31042703-31042807,31043115-31043286,
31043916-31043980,31044179-31044502,31044729-31044846,
31044928-31045011,31045472-31045603,31045714-31046570,
31046735-31046849,31047371-31047481,31047763-31047824
Length = 904
Score = 25.8 bits (54), Expect = 9.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 138 QSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQ 302
+SD ++GD+S S ++ S H A D +K S +LKKNV L+
Sbjct: 269 ESDSEDSGDQSDHSTDDEDSSDESHDADEKDEIAHQK--DSLNLKKNVDKEMTLE 321
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 25.8 bits (54), Expect = 9.8
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = -2
Query: 353 TSTRTNLLQNLDQVPQFLQLFCTLNILFQ------ILRFNSFL*PSQIYCFRDVRTCGFY 192
TST+ N+L L+ P+ L ++F+ I R + P + Y FR R+ FY
Sbjct: 132 TSTQENILAILEFNPEGLPQGWVKEVVFRKTHTGRIRRDRHYTDPIKSYVFRTKRSAAFY 191
Query: 191 V 189
V
Sbjct: 192 V 192
>03_06_0026 -
31118997-31119113,31119700-31119900,31120032-31120218,
31120339-31120415,31120738-31120815,31120858-31120974,
31121047-31121175,31121327-31121479,31121589-31122044,
31122122-31122239,31122385-31122575,31123140-31123415,
31123524-31123700,31124040-31124141,31124227-31124459,
31125563-31125764
Length = 937
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 231 LTRLKKAIKSEDLKKNVQSAKKLQKLRYLIQILKK 335
L LKK EDL+ ++AKK K++ + I +K
Sbjct: 631 LAELKKFADDEDLQSEWRAAKKANKVKVVSLIREK 665
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,991,324
Number of Sequences: 37544
Number of extensions: 99385
Number of successful extensions: 375
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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