Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1678X
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.62 
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)                28   2.5  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_30136| Best HMM Match : HSP20 (HMM E-Value=0.44)                    27   5.8  
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_23990| Best HMM Match : DUF1677 (HMM E-Value=1.7)                   26   7.7  

>SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 123 VKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRL 242
           +K  RQ    +   ++  SC E V+  CP+ AK + L RL
Sbjct: 218 LKHFRQDQKPKGAGQTCLSCPEEVERLCPYSAKKIYLDRL 257


>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
          Length = 496

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 105 RTQDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTR 239
           + +D   KKK+    GEN D + E  ++N K A    +K   LTR
Sbjct: 19  KEKDKKGKKKKGEQNGENNDSAKEESKKNKKEAKEAKSKTT-LTR 62


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 22/77 (28%), Positives = 40/77 (51%)
 Frame = +3

Query: 105 RTQDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQ 284
           R Q   ++ K      EN  E  E+C+   K+    + K +D  R + A  ++DL+KN+ 
Sbjct: 286 REQFARLQAKYDELVAENA-ELAENCDLLEKNEA-RLKKEIDDLRAQLA-DNDDLEKNLD 342

Query: 285 SAKKLQKLRYLIQILKK 335
             +KL+  +Y + I++K
Sbjct: 343 DMRKLES-KYELVIIEK 358


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 198 SACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQKLRYLIQI 326
           S    + K+ D+T +KK I    L+KN +S +  ++L  L  I
Sbjct: 255 SKAKELLKSKDITSVKKVISLTKLRKNYRSFESKRQLSSLYDI 297


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 147 PGENGDESTESCEENVKSACPHVAKAV-DLTRLKKAIK 257
           PG   +E  ++C+  V S CP   K + D + +K+A++
Sbjct: 75  PGNMVNEEVQACKAKVFSQCPAPPKCLADYSSVKQAVE 112


>SB_30136| Best HMM Match : HSP20 (HMM E-Value=0.44)
          Length = 233

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 207 PHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQKLRYLIQILKKI 338
           PH  +AV   +  + + SE++K +  SAK+ Q   +L+  + K+
Sbjct: 96  PHYVRAVIKGKAFQLVLSEEVKPDSSSAKRSQTTGHLLITMPKM 139


>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 132 KRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKK 248
           KR   PG N DE  E CE    S  P +     LT +++
Sbjct: 293 KRPFTPGVNEDEIEEECEGKSDSVVPFLTFDGILTEIER 331


>SB_23990| Best HMM Match : DUF1677 (HMM E-Value=1.7)
          Length = 493

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 79  YFNICKRDYVHKTQWLKKRDRATLEKMETNQQSL 180
           Y  I  +D VHKT+W  + ++ +  KM+   + L
Sbjct: 105 YKLIFNQDAVHKTEWFPRYEQTSEPKMDDLSERL 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,618,618
Number of Sequences: 59808
Number of extensions: 132505
Number of successful extensions: 520
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)