Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1678X
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 29 0.93
U88177-3|AAB42292.1| 191|Caenorhabditis elegans Hypothetical pr... 29 1.2
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 2.2
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 2.2
Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z50029-1|CAA90340.2| 460|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z73970-1|CAA98244.1| 254|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 27 5.0
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical pr... 26 6.6
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 26 6.6
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 26 6.6
EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein. 26 8.7
AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical... 26 8.7
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 29.1 bits (62), Expect = 0.93
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = +3
Query: 150 GENGDESTES-CEENVKSACPHVAKAVDLTRLKKAIKSED-----LKKNVQSAKKLQKLR 311
GE+ S E+ CE K+AC + K + L KAIK ++ L++ V A + Q
Sbjct: 48 GEHLQASVENLCEVGAKNACQQLLKLLHGDNLPKAIKQQEATTKRLEQTVDMAAENQNFE 107
Query: 312 YLIQILK 332
L I K
Sbjct: 108 ALQSIWK 114
>U88177-3|AAB42292.1| 191|Caenorhabditis elegans Hypothetical
protein F53E10.6 protein.
Length = 191
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = +3
Query: 126 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKLQK 305
+++ S GE+G+E S + A VA R KK IK L K QS KK K
Sbjct: 20 EREEMSSGGESGEEGPSSVDGGAGDADETVAFPAIERRKKKVIKK--LTKKEQSLKKSVK 77
Query: 306 LRYLIQI 326
Y I++
Sbjct: 78 -EYRIKL 83
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 165 ESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKK 296
+S ES E + + CP + A KKA K D V+ AKK
Sbjct: 715 KSRESAERDDEDYCPSSSTAYKKKYTKKAKKDNDDAPKVKKAKK 758
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 165 ESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKK 296
+S ES E + + CP + A KKA K D V+ AKK
Sbjct: 728 KSRESAERDDEDYCPSSSTAYKKKYTKKAKKDNDDAPKVKKAKK 771
>Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical
protein F14F8.12 protein.
Length = 329
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 37 IVVSLKPFYCNIYYYFNICKRDYVHKTQWLKKRDRATLEKMETNQQ 174
+++ L CNI+ N+ +HK R++A L +M TN +
Sbjct: 248 LIIQLSYLRCNIHEVINLYSTFDLHKFLKNYIREKAKLARMTTNDE 293
>Z50029-1|CAA90340.2| 460|Caenorhabditis elegans Hypothetical
protein ZC504.1 protein.
Length = 460
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 40 VVSLKPFYCNIYYYFNICKRDYVHKTQWL 126
V S +P CN Y ++C DYV TQ L
Sbjct: 116 VRSNQPMRCNPSAYSDVCPADYVCTTQGL 144
>Z73970-1|CAA98244.1| 254|Caenorhabditis elegans Hypothetical
protein C29A12.1 protein.
Length = 254
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 219 KAVDLTRLKKAIKSEDLKKNVQSAKKLQKLR 311
K + + RL++ +K E LKK ++S KKL+ L+
Sbjct: 130 KEIVMRRLEQ-LKKEQLKKTMESEKKLRDLQ 159
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 126 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKK 275
K +++ D E T SC E S + + + KKA KS + K+
Sbjct: 776 KSEKKKDSCERSSAETSSCTEQTSSPMSEASSSDGRKKPKKAGKSAERKE 825
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 126 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKK 275
K +++ D E T SC E S + + + KKA KS + K+
Sbjct: 776 KSEKKKDSCERSSAETSSCTEQTSSPMSEASSSDGRKKPKKAGKSAERKE 825
>Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical
protein F59B2.5 protein.
Length = 468
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +3
Query: 105 RTQDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKS 260
RT+D + + ++ + + CE+ + S +AK D+T ++ ++S
Sbjct: 57 RTRDAHKNRGLSAQTAKSSEAEVKRCEDLILSYSRQLAKEKDITGIRTLVES 108
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/66 (21%), Positives = 30/66 (45%)
Frame = +3
Query: 108 TQDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQS 287
T+ ++KR+ + D+ E+ + + + K + R+K+A + E+ KK
Sbjct: 178 TKTRSARRKRRDSDAPDSDQEFEAFIKQQEQLEDDLVKDKEDARIKRAAEREEKKKGALE 237
Query: 288 AKKLQK 305
A + K
Sbjct: 238 AARAAK 243
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/66 (21%), Positives = 30/66 (45%)
Frame = +3
Query: 108 TQDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQS 287
T+ ++KR+ + D+ E+ + + + K + R+K+A + E+ KK
Sbjct: 178 TKTRSARRKRRDSDAPDSDQEFEAFIKQQEQLEDDLVKDKEDARIKRAAEREEKKKGALE 237
Query: 288 AKKLQK 305
A + K
Sbjct: 238 AARAAK 243
>EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein.
Length = 801
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 132 KRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKL 299
+ ++ E+ DE E+N K+ K V +T + K+ +KNV+ AKK+
Sbjct: 262 ENENGDAEDSDEMDSDAEDNTKTL-----KEV-MTSFRNVKKTRKREKNVERAKKM 311
>AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical
protein Y39B6A.14 protein.
Length = 801
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 132 KRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKSEDLKKNVQSAKKL 299
+ ++ E+ DE E+N K+ K V +T + K+ +KNV+ AKK+
Sbjct: 262 ENENGDAEDSDEMDSDAEDNTKTL-----KEV-MTSFRNVKKTRKREKNVERAKKM 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,615,356
Number of Sequences: 27780
Number of extensions: 105744
Number of successful extensions: 525
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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