Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1678X
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   1.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   4.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   7.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   7.5  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    20   9.9  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    20   9.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 203 CGFYVLFARLC*FVSIFSRVALSL 132
           C FY+     C   SIF+ VA+S+
Sbjct: 259 CDFYIAMDVTCSTSSIFNLVAISI 282


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +1

Query: 70  IYYYFNICKRDYVHKTQWL---KKRDRATLEKMETNQQSLAKRT*NPHVLTSRK 222
           ++Y  + C R Y  + +WL   + R  +  E      Q +AK   N   ++  K
Sbjct: 713 LHYETDPCVRYYPRRKEWLYLHRARSESEFEMYHQQLQGVAKNKKNVGSMSRNK 766


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 246 KAIKSEDLKKNVQSAKKLQKLRY 314
           K +++ED K +++S  K ++L+Y
Sbjct: 16  KQLRNEDNKIDLRSRTKEERLQY 38


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 142 LCLFFLTIVSCVR 104
           L LFFL + SC R
Sbjct: 6   LLLFFLLLSSCTR 18


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 142 LCLFFLTIVSCVR 104
           L LFFL + SC R
Sbjct: 6   LLLFFLLLSSCTR 18


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 258 SEDLKKNVQSAK 293
           SED+  N+Q+AK
Sbjct: 47  SEDIATNIQAAK 58


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 258 SEDLKKNVQSAK 293
           SED+  N+Q+AK
Sbjct: 47  SEDIATNIQAAK 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,729
Number of Sequences: 438
Number of extensions: 1088
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)