Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1677X
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0051 - 542615-544066                                             28   3.0  
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552...    27   5.3  
07_03_0156 - 14524757-14526403                                         26   9.2  

>04_01_0051 - 542615-544066
          Length = 483

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 323 RLRSLTCCSNVMMTSTAMLRMPSWSAACRS*GASYTSFPAPS 198
           RL  L CCS+ +  S A     S SA   S  +  TS+  PS
Sbjct: 9   RLLFLVCCSSSLAASAAAASSSSGSACSCSSSSDETSYSFPS 50


>12_02_0137 +
           14153603-14153629,14154136-14154586,14155066-14155260,
           14155366-14155628,14155964-14156104,14156188-14156283,
           14156672-14156749,14157134-14157194,14157324-14157511,
           14158441-14158569
          Length = 542

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 263 MPSWSAACRS*GASYTSFPAPSGLRLCPLFLSSP*HCWPGG 141
           MPS +AACRS G +  +    +  R   + L+SP   W  G
Sbjct: 106 MPSSAAACRSTGETIAAVAKSAQARSAAVALASPPPGWVQG 146


>07_03_0156 - 14524757-14526403
          Length = 548

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 142 PPGQQCQGEDKNKGHKRSPEGAGKDVYDA--PQERQAADQLGILNMAVEV 285
           PPG  C    K+K    + EG+G    +A   QE  A  Q  I    ++V
Sbjct: 219 PPGSLCMINHKDKEVMNALEGSGAPASEAEVQQEVTAMSQTNIFRPGIDV 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,996,632
Number of Sequences: 37544
Number of extensions: 173847
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)