Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1677X
         (389 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00221-1|CAA68368.1|  710|Drosophila melanogaster protein ( Dros...    67   7e-12
J03148-1|AAA28442.1|  710|Drosophila melanogaster protein ( D.me...    67   7e-12
BT003251-1|AAO25008.1|  744|Drosophila melanogaster LD29371p pro...    67   7e-12
AE014134-1863|AAF52934.2|  710|Drosophila melanogaster CG5102-PA...    67   7e-12
BT003800-1|AAO41483.1|  625|Drosophila melanogaster AT23163p pro...    29   2.8  
AY051614-1|AAK93038.1|  798|Drosophila melanogaster GH25973p pro...    29   2.8  
AE014297-2779|AAN13827.1|  625|Drosophila melanogaster CG5077-PD...    29   2.8  
AE014297-2778|AAN13826.3|  800|Drosophila melanogaster CG5077-PC...    29   2.8  
AE014297-2777|AAN13825.2|  799|Drosophila melanogaster CG5077-PB...    29   2.8  
AE014297-2776|AAG22160.2|  816|Drosophila melanogaster CG5077-PA...    29   2.8  

>Y00221-1|CAA68368.1|  710|Drosophila melanogaster protein (
           Drosophila mRNA forthe sex determining gene
           daughterless. ).
          Length = 710

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = +2

Query: 92  DEDDVDPDTKXXXXXXXXXXXXXXXXIRIRDINEALKELGRMCMTHLKSDKPQT 253
           ++DD +P  K                IRIRDINEALKELGRMCMTHLKSDKPQT
Sbjct: 539 EDDDAEPAVKAIREKERRQANNARERIRIRDINEALKELGRMCMTHLKSDKPQT 592



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 33/45 (73%), Positives = 34/45 (75%)
 Frame = +1

Query: 253 QLGILNMAVEVIMTLEQQVRERNLNPKAACLXXXXXXXXXXXPKL 387
           +LGILNMAVEVIMTLEQQVRERNLNPKAACL           PKL
Sbjct: 593 KLGILNMAVEVIMTLEQQVRERNLNPKAACLKRREEEKAEDGPKL 637


>J03148-1|AAA28442.1|  710|Drosophila melanogaster protein (
           D.melanogaster daughterlessprotein (da) mRNA, complete
           cds. ).
          Length = 710

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = +2

Query: 92  DEDDVDPDTKXXXXXXXXXXXXXXXXIRIRDINEALKELGRMCMTHLKSDKPQT 253
           ++DD +P  K                IRIRDINEALKELGRMCMTHLKSDKPQT
Sbjct: 539 EDDDAEPAVKAIREKERRQANNARERIRIRDINEALKELGRMCMTHLKSDKPQT 592



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 33/45 (73%), Positives = 34/45 (75%)
 Frame = +1

Query: 253 QLGILNMAVEVIMTLEQQVRERNLNPKAACLXXXXXXXXXXXPKL 387
           +LGILNMAVEVIMTLEQQVRERNLNPKAACL           PKL
Sbjct: 593 KLGILNMAVEVIMTLEQQVRERNLNPKAACLKRREEEKAEDGPKL 637


>BT003251-1|AAO25008.1|  744|Drosophila melanogaster LD29371p
           protein.
          Length = 744

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = +2

Query: 92  DEDDVDPDTKXXXXXXXXXXXXXXXXIRIRDINEALKELGRMCMTHLKSDKPQT 253
           ++DD +P  K                IRIRDINEALKELGRMCMTHLKSDKPQT
Sbjct: 539 EDDDAEPAVKAIREKERRQANNARERIRIRDINEALKELGRMCMTHLKSDKPQT 592



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 33/45 (73%), Positives = 34/45 (75%)
 Frame = +1

Query: 253 QLGILNMAVEVIMTLEQQVRERNLNPKAACLXXXXXXXXXXXPKL 387
           +LGILNMAVEVIMTLEQQVRERNLNPKAACL           PKL
Sbjct: 593 KLGILNMAVEVIMTLEQQVRERNLNPKAACLKRREEEKAEDGPKL 637


>AE014134-1863|AAF52934.2|  710|Drosophila melanogaster CG5102-PA
           protein.
          Length = 710

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = +2

Query: 92  DEDDVDPDTKXXXXXXXXXXXXXXXXIRIRDINEALKELGRMCMTHLKSDKPQT 253
           ++DD +P  K                IRIRDINEALKELGRMCMTHLKSDKPQT
Sbjct: 539 EDDDAEPAVKAIREKERRQANNARERIRIRDINEALKELGRMCMTHLKSDKPQT 592



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 33/45 (73%), Positives = 34/45 (75%)
 Frame = +1

Query: 253 QLGILNMAVEVIMTLEQQVRERNLNPKAACLXXXXXXXXXXXPKL 387
           +LGILNMAVEVIMTLEQQVRERNLNPKAACL           PKL
Sbjct: 593 KLGILNMAVEVIMTLEQQVRERNLNPKAACLKRREEEKAEDGPKL 637


>BT003800-1|AAO41483.1|  625|Drosophila melanogaster AT23163p
           protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 142 PPGQQCQGEDKNKGHKRSPEGAGKDVYDAPQ---ERQAADQLGILNMAV-EVIMTLEQQV 309
           PPG     + KNK    +P     D   +PQ   +R ++  +  L +AV +V   LEQ  
Sbjct: 505 PPGGSAVPKAKNKSLVLAPRDTNSDSSQSPQGAVKRSSSSAIKQLALAVDQVNRVLEQHT 564

Query: 310 RERN 321
           R+ N
Sbjct: 565 RQLN 568


>AY051614-1|AAK93038.1|  798|Drosophila melanogaster GH25973p
           protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 142 PPGQQCQGEDKNKGHKRSPEGAGKDVYDAPQ---ERQAADQLGILNMAV-EVIMTLEQQV 309
           PPG     + KNK    +P     D   +PQ   +R ++  +  L +AV +V   LEQ  
Sbjct: 678 PPGGSAVPKAKNKSLVLAPRDTNSDSSQSPQGAVKRSSSSAIKQLALAVDQVNRVLEQHT 737

Query: 310 RERN 321
           R+ N
Sbjct: 738 RQLN 741


>AE014297-2779|AAN13827.1|  625|Drosophila melanogaster CG5077-PD,
           isoform D protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 142 PPGQQCQGEDKNKGHKRSPEGAGKDVYDAPQ---ERQAADQLGILNMAV-EVIMTLEQQV 309
           PPG     + KNK    +P     D   +PQ   +R ++  +  L +AV +V   LEQ  
Sbjct: 505 PPGGSAVPKAKNKSLVLAPRDTNSDSSQSPQGAVKRSSSSAIKQLALAVDQVNRVLEQHT 564

Query: 310 RERN 321
           R+ N
Sbjct: 565 RQLN 568


>AE014297-2778|AAN13826.3|  800|Drosophila melanogaster CG5077-PC,
           isoform C protein.
          Length = 800

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 142 PPGQQCQGEDKNKGHKRSPEGAGKDVYDAPQ---ERQAADQLGILNMAV-EVIMTLEQQV 309
           PPG     + KNK    +P     D   +PQ   +R ++  +  L +AV +V   LEQ  
Sbjct: 680 PPGGSAVPKAKNKSLVLAPRDTNSDSSQSPQGAVKRSSSSAIKQLALAVDQVNRVLEQHT 739

Query: 310 RERN 321
           R+ N
Sbjct: 740 RQLN 743


>AE014297-2777|AAN13825.2|  799|Drosophila melanogaster CG5077-PB,
           isoform B protein.
          Length = 799

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 142 PPGQQCQGEDKNKGHKRSPEGAGKDVYDAPQ---ERQAADQLGILNMAV-EVIMTLEQQV 309
           PPG     + KNK    +P     D   +PQ   +R ++  +  L +AV +V   LEQ  
Sbjct: 679 PPGGSAVPKAKNKSLVLAPRDTNSDSSQSPQGAVKRSSSSAIKQLALAVDQVNRVLEQHT 738

Query: 310 RERN 321
           R+ N
Sbjct: 739 RQLN 742


>AE014297-2776|AAG22160.2|  816|Drosophila melanogaster CG5077-PA,
           isoform A protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 142 PPGQQCQGEDKNKGHKRSPEGAGKDVYDAPQ---ERQAADQLGILNMAV-EVIMTLEQQV 309
           PPG     + KNK    +P     D   +PQ   +R ++  +  L +AV +V   LEQ  
Sbjct: 696 PPGGSAVPKAKNKSLVLAPRDTNSDSSQSPQGAVKRSSSSAIKQLALAVDQVNRVLEQHT 755

Query: 310 RERN 321
           R+ N
Sbjct: 756 RQLN 759


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.316    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,956,943
Number of Sequences: 53049
Number of extensions: 268832
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1086986940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)