Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1677X
(389 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 40 5e-04
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 40 5e-04
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 39 0.001
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 39 0.001
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 28 2.0
Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 27 4.7
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 27 4.7
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 27 4.7
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 27 4.7
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 27 4.7
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 27 4.7
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 27 4.7
Z31590-8|CAA83465.1| 812|Caenorhabditis elegans Hypothetical pr... 26 8.2
AF518559-1|AAM97343.1| 793|Caenorhabditis elegans inositol poly... 26 8.2
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 253 QLGILNMAVEVIMTLEQQVRERNLNPK 333
+LGIL+ AV VI LE+QVR+RN+NPK
Sbjct: 342 KLGILHNAVSVITQLEEQVRQRNMNPK 368
Score = 36.7 bits (81), Expect = 0.006
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 170 IRIRDINEALKELGRMCMTH 229
+R+RDIN A KELGRMC H
Sbjct: 313 VRVRDINSAFKELGRMCTQH 332
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 253 QLGILNMAVEVIMTLEQQVRERNLNPK 333
+LGIL+ AV VI LE+QVR+RN+NPK
Sbjct: 342 KLGILHNAVSVITQLEEQVRQRNMNPK 368
Score = 36.7 bits (81), Expect = 0.006
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 170 IRIRDINEALKELGRMCMTH 229
+R+RDIN A KELGRMC H
Sbjct: 313 VRVRDINSAFKELGRMCTQH 332
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 253 QLGILNMAVEVIMTLEQQVRERNLNPK 333
+LGIL AV VI LE+QVR+RN+NPK
Sbjct: 342 KLGILYNAVSVITQLEEQVRQRNMNPK 368
Score = 36.7 bits (81), Expect = 0.006
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 170 IRIRDINEALKELGRMCMTH 229
+R+RDIN A KELGRMC H
Sbjct: 313 VRVRDINSAFKELGRMCTQH 332
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 253 QLGILNMAVEVIMTLEQQVRERNLNPK 333
+LGIL AV VI LE+QVR+RN+NPK
Sbjct: 342 KLGILYNAVSVITQLEEQVRQRNMNPK 368
Score = 36.7 bits (81), Expect = 0.006
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 170 IRIRDINEALKELGRMCMTH 229
+R+RDIN A KELGRMC H
Sbjct: 313 VRVRDINSAFKELGRMCTQH 332
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 261 HPQHGRRSHHDVGATSQRTQSKS*SGVLEATRRRK 365
HP H RR +VG S+R + ++ + A + +K
Sbjct: 51 HPPHNRREKENVGGRSERPREEAEAAAAAAQKEQK 85
>Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical
protein F10A3.4 protein.
Length = 569
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 306 LLLQRHDDFDGHVEDAQLVCGLSLLRCVIH 217
LLLQ H DF + ++V L+++R ++H
Sbjct: 64 LLLQFHVDFQADPDKVEIVDSLNVVRYIVH 93
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +1
Query: 148 GQQCQGEDKNKGHKRSPEGAGKDVYDAPQERQAADQLGILNMAVEVIMTLEQQVRERNLN 327
G+ +G S EGA D + Q + G +++ V LE++ ERN
Sbjct: 274 GRSTASSTTTEGETASNEGADSDEDEGSMPSQESSSGGFMDLRDSVRECLEKEPSERNSE 333
Query: 328 PKAACL 345
A L
Sbjct: 334 DLAVLL 339
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +1
Query: 148 GQQCQGEDKNKGHKRSPEGAGKDVYDAPQERQAADQLGILNMAVEVIMTLEQQVRERNLN 327
G+ +G S EGA D + Q + G +++ V LE++ ERN
Sbjct: 274 GRSTASSTTTEGETASNEGADSDEDEGSMPSQESSSGGFMDLRDSVRECLEKEPSERNSE 333
Query: 328 PKAACL 345
A L
Sbjct: 334 DLAVLL 339
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +1
Query: 148 GQQCQGEDKNKGHKRSPEGAGKDVYDAPQERQAADQLGILNMAVEVIMTLEQQVRERNLN 327
G+ +G S EGA D + Q + G +++ V LE++ ERN
Sbjct: 274 GRSTASSTTTEGETASNEGADSDEDEGSMPSQESSSGGFMDLRDSVRECLEKEPSERNSE 333
Query: 328 PKAACL 345
A L
Sbjct: 334 DLAVLL 339
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +1
Query: 148 GQQCQGEDKNKGHKRSPEGAGKDVYDAPQERQAADQLGILNMAVEVIMTLEQQVRERNLN 327
G+ +G S EGA D + Q + G +++ V LE++ ERN
Sbjct: 274 GRSTASSTTTEGETASNEGADSDEDEGSMPSQESSSGGFMDLRDSVRECLEKEPSERNSE 333
Query: 328 PKAACL 345
A L
Sbjct: 334 DLAVLL 339
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +1
Query: 148 GQQCQGEDKNKGHKRSPEGAGKDVYDAPQERQAADQLGILNMAVEVIMTLEQQVRERNLN 327
G+ +G S EGA D + Q + G +++ V LE++ ERN
Sbjct: 151 GRSTASSTTTEGETASNEGADSDEDEGSMPSQESSSGGFMDLRDSVRECLEKEPSERNSE 210
Query: 328 PKAACL 345
A L
Sbjct: 211 DLAVLL 216
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +1
Query: 148 GQQCQGEDKNKGHKRSPEGAGKDVYDAPQERQAADQLGILNMAVEVIMTLEQQVRERNLN 327
G+ +G S EGA D + Q + G +++ V LE++ ERN
Sbjct: 274 GRSTASSTTTEGETASNEGADSDEDEGSMPSQESSSGGFMDLRDSVRECLEKEPSERNSE 333
Query: 328 PKAACL 345
A L
Sbjct: 334 DLAVLL 339
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +1
Query: 148 GQQCQGEDKNKGHKRSPEGAGKDVYDAPQERQAADQLGILNMAVEVIMTLEQQVRERNLN 327
G+ +G S EGA D + Q + G +++ V LE++ ERN
Sbjct: 274 GRSTASSTTTEGETASNEGADSDEDEGSMPSQESSSGGFMDLRDSVRECLEKEPSERNSE 333
Query: 328 PKAACL 345
A L
Sbjct: 334 DLAVLL 339
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +1
Query: 148 GQQCQGEDKNKGHKRSPEGAGKDVYDAPQERQAADQLGILNMAVEVIMTLEQQVRERNLN 327
G+ +G S EGA D + Q + G +++ V LE++ ERN
Sbjct: 274 GRSTASSTTTEGETASNEGADSDEDEGSMPSQESSSGGFMDLRDSVRECLEKEPSERNSE 333
Query: 328 PKAACL 345
A L
Sbjct: 334 DLAVLL 339
>Z31590-8|CAA83465.1| 812|Caenorhabditis elegans Hypothetical
protein R01H10.7 protein.
Length = 812
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 250 DQLGILNMAVEVIMTLEQQVRERNLN-PKAAC 342
D+ G++ AVE +LEQ+VR R + P A C
Sbjct: 568 DERGMIEDAVEAWKSLEQRVRFRLVRAPSAVC 599
>AF518559-1|AAM97343.1| 793|Caenorhabditis elegans inositol
polyphosphate-4-phosphataseprotein.
Length = 793
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 250 DQLGILNMAVEVIMTLEQQVRERNLN-PKAAC 342
D+ G++ AVE +LEQ+VR R + P A C
Sbjct: 549 DERGMIEDAVEAWKSLEQRVRFRLVRAPSAVC 580
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,539,759
Number of Sequences: 27780
Number of extensions: 120528
Number of successful extensions: 391
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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