Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1677X
         (389 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24800.1 68417.m03552 MA3 domain-containing protein similar t...    27   3.4  
At3g52250.1 68416.m05742 myb family transcription factor contain...    27   4.5  
At1g74830.1 68414.m08670 expressed protein contains Pfam profile...    27   4.5  
At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase fam...    26   7.8  

>At4g24800.1 68417.m03552 MA3 domain-containing protein similar to
           programmed cell death 4 protein [Gallus gallus]
           GI:12958564; contains Pfam profile PF02847: MA3 domain
          Length = 702

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 306 LLLQRHDDFDGHVEDAQLVCGLSLLRCVI-HILPSSF 199
           LLL+  DDF   + DA  V  L L R V+  ILP +F
Sbjct: 195 LLLESADDFVVDIPDAVNVLALFLARAVVDDILPPAF 231


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 276  RRSHHDVGATSQRTQSKS*SGVLEATRRRKGGG 374
            R+   D GAT  +  SK+  GV++A  R +  G
Sbjct: 1336 RKGSGDQGATMPKFSSKNQDGVMQAANRTRNSG 1368


>At1g74830.1 68414.m08670 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 542

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 151 QQCQGE--DKNKGHKRSPEGAGKDVYDAPQERQAADQLGILNMAVEV 285
           QQ  GE  D+N   KRS E   ++V  A +E+ +  + GI+    E+
Sbjct: 443 QQENGENIDQNGQSKRSEESTAENVVSADEEKGSESKEGIVKELSEI 489


>At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 546

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 332 LGFRLRSLTCCSNVMMTSTAMLRMPSW 252
           LGF++     CS V    TA L MP W
Sbjct: 313 LGFKVMMAYGCSEVYGLGTACLWMPEW 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,251,061
Number of Sequences: 28952
Number of extensions: 113765
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)