Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1675
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0241 - 27813076-27813622,27813695-27814125 30 1.4
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.8
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 3.2
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.2
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 28 5.6
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 28 7.4
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 7.4
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 7.4
12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492... 27 9.7
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 27 9.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 9.7
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 27 9.7
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 9.7
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 254 IEPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVRQEPAPHK 421
+EP H + ++ R +R+ ++ + HR RS H A + V Q H+
Sbjct: 22 VEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 112 DLKSQLEGFNTSCLRDVDTNEKIVL 186
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 119 RVSSKASTPAVSVTSTPMKRLCFR 190
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 74 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 166
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +2
Query: 95 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL----RRPRSLYSTVSRSLIEP 262
SP + SS P +++ + P R + PL R R + V+R IEP
Sbjct: 10 SPEANTLSPTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVARIGIEP 69
Query: 263 AEAHRDSGEEPAS 301
A R EEP S
Sbjct: 70 AMGRRQQPEEPDS 82
>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 262 WLDQTSRYRRIKTSGSSQWRRLQQTE 185
W DQ RYR+++T S + R TE
Sbjct: 1056 WSDQMERYRQLRTVASEAFFRCSMTE 1081
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 88 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 180
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 88 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 180
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>12_01_1017 -
10348198-10348326,10348412-10348532,10348746-10349275,
10349318-10349433,10349672-10349990,10350019-10350106,
10350194-10350639
Length = 582
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 262 WLDQTSRYRRIKTSGS 215
WLDQ RYRR+++ G+
Sbjct: 382 WLDQMERYRRLRSMGT 397
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 242 IPSNKDFWVFSVATSSADGSTIFSLVSTSRRQLVL 138
+PSN+ + ++ TSS++GS FSL +++ + L
Sbjct: 500 LPSNESWDYYASRTSSSNGSVYFSLQNSTNSDMDL 534
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 23 PLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKR 178
P P I +++PAP PP ++S R+P SSK P P R
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANR 702
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +2
Query: 197 KTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEPASGQRCY---RSGEGKEQIPERHR 358
+ +PL PR S VS DSGE+ RCY RSG P +++
Sbjct: 84 EATPLAAPRQ--SVVSAPFTASTSRKEDSGEDCRDPPRCYICKRSGHISSGCPSKYK 138
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 294 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 386
P ++ E EKEK K +N + P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,150,436
Number of Sequences: 37544
Number of extensions: 405212
Number of successful extensions: 1284
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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