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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1675
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0241 - 27813076-27813622,27813695-27814125                       30   1.4  
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    30   1.8  
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222           29   3.2  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    29   3.2  
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911...    28   5.6  
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234...    28   7.4  
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812...    28   7.4  
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    28   7.4  
12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492...    27   9.7  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    27   9.7  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    27   9.7  
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497...    27   9.7  
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    27   9.7  

>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 254 IEPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVRQEPAPHK 421
           +EP   H  + ++     R +R+     ++ + HR  RS H A  +  V Q    H+
Sbjct: 22  VEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78


>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 112 DLKSQLEGFNTSCLRDVDTNEKIVL 186
           DL+S+L+  NT CL + + N+K+++
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLII 78


>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
          Length = 212

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 119 RVSSKASTPAVSVTSTPMKRLCFR 190
           +VSS++S+P  SVT+  ++ +CFR
Sbjct: 72  QVSSQSSSPVESVTTATLRPICFR 95


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 74  TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 166
           TLPP + SP SP T   SSK  TP+ S  S+
Sbjct: 31  TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61


>10_06_0110 +
           10889414-10889669,10889756-10889806,10890595-10891163,
           10891178-10891660,10891747-10891944,10893300-10893354,
           10893372-10893631
          Length = 623

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 95  SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL----RRPRSLYSTVSRSLIEP 262
           SP +      SS    P +++ + P  R       + PL    R  R   + V+R  IEP
Sbjct: 10  SPEANTLSPTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVARIGIEP 69

Query: 263 AEAHRDSGEEPAS 301
           A   R   EEP S
Sbjct: 70  AMGRRQQPEEPDS 82


>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
            2349688-2350045,2350818-2351177,2351321-2351419,
            2351856-2351948,2352078-2352215,2352389-2352476,
            2352682-2352770,2353113-2353178,2353370-2353481,
            2354702-2354901
          Length = 1185

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 262  WLDQTSRYRRIKTSGSSQWRRLQQTE 185
            W DQ  RYR+++T  S  + R   TE
Sbjct: 1056 WSDQMERYRQLRTVASEAFFRCSMTE 1081


>03_05_0070 -
           20478396-20478505,20478605-20478780,20481162-20481265,
           20481346-20481504,20481718-20481857,20482222-20482311,
           20482902-20482970,20484295-20484516,20486175-20486293,
           20486377-20486492,20488058-20488146,20488790-20488883
          Length = 495

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 88  KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 180
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 88  KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 180
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 88  KELDERMHDLKSELEGYNTGDSDDINKKKAL 118


>12_01_1017 -
           10348198-10348326,10348412-10348532,10348746-10349275,
           10349318-10349433,10349672-10349990,10350019-10350106,
           10350194-10350639
          Length = 582

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 262 WLDQTSRYRRIKTSGS 215
           WLDQ  RYRR+++ G+
Sbjct: 382 WLDQMERYRRLRSMGT 397


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -3

Query: 242 IPSNKDFWVFSVATSSADGSTIFSLVSTSRRQLVL 138
           +PSN+ +  ++  TSS++GS  FSL +++   + L
Sbjct: 500 LPSNESWDYYASRTSSSNGSVYFSLQNSTNSDMDL 534


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 23  PLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKR 178
           P P    I +++PAP    PP ++S R+P     SSK   P       P  R
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANR 702


>09_04_0695 -
           19547101-19548010,19548089-19548587,19549461-19549728,
           19551025-19551687,19551849-19552060,19552203-19552593,
           19552659-19553107,19553454-19553790
          Length = 1242

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = +2

Query: 197 KTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEPASGQRCY---RSGEGKEQIPERHR 358
           + +PL  PR   S VS           DSGE+     RCY   RSG      P +++
Sbjct: 84  EATPLAAPRQ--SVVSAPFTASTSRKEDSGEDCRDPPRCYICKRSGHISSGCPSKYK 138


>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 294 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 386
           P  ++   E EKEK K +N +    P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,150,436
Number of Sequences: 37544
Number of extensions: 405212
Number of successful extensions: 1284
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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