BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1675 (649 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0241 - 27813076-27813622,27813695-27814125 30 1.4 07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.8 09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 3.2 01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.2 10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 28 5.6 11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 28 7.4 03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 7.4 02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 7.4 12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492... 27 9.7 10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 27 9.7 10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 9.7 09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 27 9.7 03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 9.7 >01_06_0241 - 27813076-27813622,27813695-27814125 Length = 325 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +2 Query: 254 IEPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVRQEPAPHK 421 +EP H + ++ R +R+ ++ + HR RS H A + V Q H+ Sbjct: 22 VEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78 >07_03_1577 - 27869596-27869682,27869769-27869869,27869956-27869995, 27870879-27870953 Length = 100 Score = 29.9 bits (64), Expect = 1.8 Identities = 10/25 (40%), Positives = 19/25 (76%) Frame = +1 Query: 112 DLKSQLEGFNTSCLRDVDTNEKIVL 186 DL+S+L+ NT CL + + N+K+++ Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78 >09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 Length = 212 Score = 29.1 bits (62), Expect = 3.2 Identities = 11/24 (45%), Positives = 19/24 (79%) Frame = +2 Query: 119 RVSSKASTPAVSVTSTPMKRLCFR 190 +VSS++S+P SVT+ ++ +CFR Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95 >01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956, 6473206-6473539,6473629-6473833,6474927-6475033, 6475117-6475269 Length = 672 Score = 29.1 bits (62), Expect = 3.2 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 74 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 166 TLPP + SP SP T SSK TP+ S S+ Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61 >10_06_0110 + 10889414-10889669,10889756-10889806,10890595-10891163, 10891178-10891660,10891747-10891944,10893300-10893354, 10893372-10893631 Length = 623 Score = 28.3 bits (60), Expect = 5.6 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Frame = +2 Query: 95 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL----RRPRSLYSTVSRSLIEP 262 SP + SS P +++ + P R + PL R R + V+R IEP Sbjct: 10 SPEANTLSPTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVARIGIEP 69 Query: 263 AEAHRDSGEEPAS 301 A R EEP S Sbjct: 70 AMGRRQQPEEPDS 82 >11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633, 2349688-2350045,2350818-2351177,2351321-2351419, 2351856-2351948,2352078-2352215,2352389-2352476, 2352682-2352770,2353113-2353178,2353370-2353481, 2354702-2354901 Length = 1185 Score = 27.9 bits (59), Expect = 7.4 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 262 WLDQTSRYRRIKTSGSSQWRRLQQTE 185 W DQ RYR+++T S + R TE Sbjct: 1056 WSDQMERYRQLRTVASEAFFRCSMTE 1081 >03_05_0070 - 20478396-20478505,20478605-20478780,20481162-20481265, 20481346-20481504,20481718-20481857,20482222-20482311, 20482902-20482970,20484295-20484516,20486175-20486293, 20486377-20486492,20488058-20488146,20488790-20488883 Length = 495 Score = 27.9 bits (59), Expect = 7.4 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 88 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 180 K+L + DLKS+LEG+NT D++ + + Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296 >02_03_0171 + 15945591-15945681,15947068-15947138,15947715-15947817, 15948189-15948328,15948535-15948693,15948775-15948878, 15950373-15950548,15952643-15952832,15953704-15953803, 15954171-15954339,15954908-15954990,15955073-15955149, 15955386-15955557 Length = 544 Score = 27.9 bits (59), Expect = 7.4 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 88 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 180 K+L + DLKS+LEG+NT D++ + + Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118 >12_01_1017 - 10348198-10348326,10348412-10348532,10348746-10349275, 10349318-10349433,10349672-10349990,10350019-10350106, 10350194-10350639 Length = 582 Score = 27.5 bits (58), Expect = 9.7 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -1 Query: 262 WLDQTSRYRRIKTSGS 215 WLDQ RYRR+++ G+ Sbjct: 382 WLDQMERYRRLRSMGT 397 >10_08_0190 + 15607241-15607409,15607932-15607990,15608883-15608991, 15609394-15609551,15609976-15610044,15610158-15610847, 15611112-15611629,15611725-15611789,15613010-15613089, 15613894-15613998,15614768-15614881,15615029-15615168, 15615257-15615385,15615903-15616055,15616186-15616327 Length = 899 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = -3 Query: 242 IPSNKDFWVFSVATSSADGSTIFSLVSTSRRQLVL 138 +PSN+ + ++ TSS++GS FSL +++ + L Sbjct: 500 LPSNESWDYYASRTSSSNGSVYFSLQNSTNSDMDL 534 >10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379, 1211452-1211878,1212091-1213219,1213623-1213746, 1214207-1214278,1215480-1215578,1215617-1215640, 1215704-1215745,1215815-1215895,1215983-1216114, 1216115-1216196,1216271-1216365,1218499-1218570, 1218676-1218792,1219379-1219447,1219521-1219587, 1219886-1220025 Length = 1269 Score = 27.5 bits (58), Expect = 9.7 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = +2 Query: 23 PLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKR 178 P P I +++PAP PP ++S R+P SSK P P R Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANR 702 >09_04_0695 - 19547101-19548010,19548089-19548587,19549461-19549728, 19551025-19551687,19551849-19552060,19552203-19552593, 19552659-19553107,19553454-19553790 Length = 1242 Score = 27.5 bits (58), Expect = 9.7 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Frame = +2 Query: 197 KTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEPASGQRCY---RSGEGKEQIPERHR 358 + +PL PR S VS DSGE+ RCY RSG P +++ Sbjct: 84 EATPLAAPRQ--SVVSAPFTASTSRKEDSGEDCRDPPRCYICKRSGHISSGCPSKYK 138 >03_04_0013 + 16436438-16436536,16437257-16437742,16437791-16437826, 16437835-16438323,16438951-16439622 Length = 593 Score = 27.5 bits (58), Expect = 9.7 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 294 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 386 P ++ E EKEK K +N + P KLKH Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,150,436 Number of Sequences: 37544 Number of extensions: 405212 Number of successful extensions: 1284 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1284 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1608522592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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