Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1675
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    55   5e-08
Z82288-1|CAB05322.2|  479|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    29   3.8  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z74037-2|CAD36492.1|  441|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    27   8.7  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 28/61 (45%), Positives = 39/61 (63%)
 Frame = +3

Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCDKNPLPTKDVIEQE 440
           +LK  ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   +K  LP+ D I+QE
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 441 K 443
           K
Sbjct: 83  K 83



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 25/64 (39%), Positives = 37/64 (57%)
 Frame = +3

Query: 255 SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCDKNPLPTKDVIE 434
           S++L  T  +EK  LP  D I+ EK+  +  + I NF    LK TET +KN LP+   + 
Sbjct: 59  STKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVA 118

Query: 435 QEKS 446
           +EK+
Sbjct: 119 REKT 122



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +1

Query: 82  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFD 255
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE FD
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFD 58



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 124 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF 252
           ++E F+++ L      EKIVLPSA+D+  EK    L D I  F
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNF 95



 Score = 33.9 bits (74), Expect = 0.100
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 79  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 219
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122


>Z82288-1|CAB05322.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK896.1 protein.
          Length = 479

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +1

Query: 427 SLSKRNQLEPLLY-NSYS---QMYLASIAVFYIDVSQIDLRRPLQVLFLFLYNGNNAW-A 591
           S+S  N+L    Y NS +   Q ++ +  +F +D  Q +L        L  Y  NNAW +
Sbjct: 302 SISDDNKLSDYSYSNSQTNIPQKFVGNYTIFVLDKGQANLS-------LKTYTPNNAWWS 354

Query: 592 MATYSNPGFYSNPN 633
              Y   GF+++PN
Sbjct: 355 YVFYGQRGFFASPN 368


>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 443 ISLNHYFITVTRKCISLVSPYFILM*VRSICVVHYKFYFC 562
           + +N Y + + R C++  +PY + +  +S  V+HY+   C
Sbjct: 374 LHVNDYSVCIKRNCLNQKAPYSVNL--KSKHVLHYRLVIC 411


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 125 SSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEP 295
           SS AS  A SVT T ++ +  + +  KT P  R +SL    +  L  PA+  +   EEP
Sbjct: 251 SSIASYSAESVTETALESVNTKSVESKTRPSSRRKSLILGAASPLKSPAKIEKPRLEEP 309


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 267 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 368
           KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 17  FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 196
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 197 KTSPLRR 217
             +P+++
Sbjct: 76  TVTPIQQ 82


>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical
           protein F16D3.4 protein.
          Length = 1232

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 563 FCTMATMPGQWRRTATPDFIQILTASR 643
           FC M T PG   R     FIQ+++AS+
Sbjct: 747 FCDMTTQPGALIRRTLCKFIQLVSASK 773


>Z74037-2|CAD36492.1|  441|Caenorhabditis elegans Hypothetical
           protein F57B7.1b protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 167 PMKRLCFRLLKTSPLRRPRSLYSTVSRSLIEPAE 268
           P K  C R+   S +RRP   YST   + ++P E
Sbjct: 380 PAKVRCLRMSSPS-IRRPSDAYSTTKMTFLKPNE 412


>Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical
           protein F57B7.1a protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 167 PMKRLCFRLLKTSPLRRPRSLYSTVSRSLIEPAE 268
           P K  C R+   S +RRP   YST   + ++P E
Sbjct: 380 PAKVRCLRMSSPS-IRRPSDAYSTTKMTFLKPNE 412


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 323 GEGKEQIPERHRELRSH*AEAHGNVRQEPAPHKGRH*AREISLNHY 460
           G+ + Q P+  +  RS   +  G++   P P      A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,171
Number of Sequences: 27780
Number of extensions: 331010
Number of successful extensions: 1153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)