Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1675
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 33 0.16
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 0.22
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 31 0.66
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.5
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 29 2.0
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.7
At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot... 29 3.5
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 4.7
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 28 4.7
At1g23230.1 68414.m02906 expressed protein 28 4.7
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 6.1
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 6.1
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 8.1
At3g28770.1 68416.m03591 expressed protein 27 8.1
At1g51900.1 68414.m05850 hypothetical protein 27 8.1
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 8.1
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 33.1 bits (72), Expect = 0.16
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Frame = +2
Query: 2 LSARIFYPLPHQKYIDSQWPAP*VTLPP*KT----SPRSPQT*RVSSKASTPAVSVTSTP 169
++ R+ P P + + S PA + PP + SP ++ +P+ S S P
Sbjct: 456 VAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSLSPP 515
Query: 170 MKRLCFRLLKTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEPASGQRCYRSGEGKEQIPE 349
++ ++L + P+RR RSL R + H G G GK
Sbjct: 516 GRK---KVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSS 572
Query: 350 RHRELRS 370
RH++ RS
Sbjct: 573 RHQKARS 579
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 95 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLIEPAE 268
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSRS
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 269 AHRDSGEEPAS 301
R P S
Sbjct: 253 RSRSRSNSPVS 263
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +3
Query: 267 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCDKNPLPTKDVIEQE 440
K +E P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 52 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 222
T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133
Query: 223 KS 228
S
Sbjct: 134 SS 135
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCDKNPLPTKDVIEQ 437
Q+K + +E+N K+ +E + + K +E + +LK T ++N ++ IE
Sbjct: 778 QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837
Query: 438 EKSAXXXXXXXXXANVSR 491
E+ A + R
Sbjct: 838 EEKEKRLIEAFERAEIER 855
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 273 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 368
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 571
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Frame = +2
Query: 119 RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSRSLIEPAE-AHRDSGEEP 295
+++++AST A P+ R+ ++L LR S ++V+ S P E + GEE
Sbjct: 438 KLTNEASTHAAQNERLPL-RVVVQVLYFEQLRANHSPVASVAASSHSPVEKTEENKGEEA 496
Query: 296 AS---------GQRCYRSGEGKEQIPERHREL 364
G + RSG G + +P R R +
Sbjct: 497 TKKVELSKKSRGSKSTRSGGGAQLMPSRSRRI 528
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 216 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 97
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 281 SGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVRQEPAPHKGRH*AREISLNHY 460
S E+ A R + + K + ER + SH ++ ++R EP H RE+ Y
Sbjct: 489 SAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEY 548
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 423 PLWGAGSCRTFPCASA*WDRSSRC-RSGICSFPSP 322
PL+G + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 64 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 216
S SD+PS L+D+ ++ +LK L+G + VDTN AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCDKNPLPTKDVIEQE 440
QL+ T+ + K P E +K K D K ++ E C P+P + ++E
Sbjct: 413 QLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGEPVPERFIVEMR 467
Query: 441 KS 446
+S
Sbjct: 468 RS 469
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCDKNPLPTKDVIEQE 440
QL+ T+ + K P E +K I D K ++ E C P+P + ++E
Sbjct: 359 QLEETDVKRKRNAPGPSPKEPAMKKQ-----ISEMDCDKEENAEDCFGEPVPERFIVEMR 413
Query: 441 KS 446
+S
Sbjct: 414 RS 415
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 231 IRRYREV*SSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCDKN 407
+R E K +E EK + KDA E + NK L+ EN D K + E ++
Sbjct: 768 VRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKED 827
Query: 408 PLPTKD 425
+KD
Sbjct: 828 KEESKD 833
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 216 DPEVFIRRYREV*SSQLKHTETQEKNPLPDKDAIEAEK 329
DP+++IR Y E + K + T + + + D+IE K
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEGVK 399
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 219 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 94
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,378,821
Number of Sequences: 28952
Number of extensions: 312414
Number of successful extensions: 1039
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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