Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1674X
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.61 
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    23   2.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.3  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 440 NTEDLYNGGQQHGSRTQGDHTELFAHIFSHIAKAKDDEKF 559
           ++ DL+NG  +HG  T  D T+    + S ++K   ++ F
Sbjct: 305 SSPDLWNGKLKHGGPTPSDATKALEKM-SELSKLGGEDLF 343



 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 267 AVTRNNVTPPEPP 305
           A+  NN+ PPE P
Sbjct: 673 ALMSNNILPPESP 685


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 264 QSRYGIYGHAIVGAVHFL 211
           Q+ YG+ GH I+ + H L
Sbjct: 62  QNGYGLPGHTIIASNHHL 79


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 319  TMLSSTLTPVRWTYTSKRPARLSSKSSKGTTALYSRTGRREHGRPI 456
            T  SST T   WT T+ R    +  ++  TT   + T     G  I
Sbjct: 1041 TWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTI 1086


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,650
Number of Sequences: 336
Number of extensions: 2956
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)