Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1674X
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.71 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 228 GAVHFLPLVHGPHANHHPNILDGRSRELCVVH 133
           G V+ L   H  HANHH  +  G S  LC  H
Sbjct: 271 GGVYHLDNHHVHHANHHAIL--GHSGFLCERH 300


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 234 IVGAVHFLPLVHGPHANHHPNILDGRSRE 148
           + G + F+P+  G H  + P +LD    E
Sbjct: 152 LAGLISFVPISLGLHRANEPVVLDDSKEE 180


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 270 VTRNNVTPPEPPRVYAYDA 326
           V R+NVTP  P R +  D+
Sbjct: 906 VARSNVTPRSPGRAWPGDS 924


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 417 IFAYGQTGTRKTYTMAG 467
           IFA  Q  T+ +YT+AG
Sbjct: 435 IFANNQPYTKDSYTVAG 451


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 487 SSGAVLLPAIV*VFRVPVCPYANIVPLYPLRTCSTIGLAVWTYMSI 350
           S G+  LP+ +   R+    + N++P     TC   G  + T +++
Sbjct: 342 SQGSAGLPSAILAMRLSHPLHGNLLPPGVCYTCDVCGKTLSTKLTL 387


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 488 EFWSRAAARHCI 453
           EF+S A A HCI
Sbjct: 4   EFYSEADASHCI 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,767
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)