Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1673X
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 65 4e-12
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 65 6e-12
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 62 4e-11
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 62 4e-11
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 59 4e-10
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 48 7e-07
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 48 9e-07
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 45 6e-06
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 39 4e-04
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 5.5
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 7.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.3
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 24 9.6
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 65.3 bits (152), Expect = 4e-12
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +3
Query: 270 VFDSNTSQMDIYVQTASPIVEQVLKGYNGTIFAYGQTGTXKTYTMAGSSTDPE 428
VF Q+ ++ + +P++EQVL GYN TIFAYGQTGT KTYTM+G +D +
Sbjct: 125 VFGPEADQLMLFENSVAPMLEQVLNGYNCTIFAYGQTGTGKTYTMSGDLSDSD 177
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 64.9 bits (151), Expect = 6e-12
Identities = 26/54 (48%), Positives = 38/54 (70%)
Frame = +3
Query: 270 VFDSNTSQMDIYVQTASPIVEQVLKGYNGTIFAYGQTGTXKTYTMAGSSTDPEL 431
VFD +Q +Y +TA P+++ +L G+N TIFAYG TG KT+T++G+ DP L
Sbjct: 110 VFDETATQQQVYERTARPLLDNILDGFNATIFAYGATGCGKTHTISGTMQDPGL 163
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 62.1 bits (144), Expect = 4e-11
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +3
Query: 270 VFDSNTSQMDIYVQTASPIVEQVLKGYNGTIFAYGQTGTXKTYTMAGSSTDP 425
+F SQ D+Y T P+++ VL+GYN T+FAYG TG KT+T++G DP
Sbjct: 100 LFGEEASQEDVYKGTTEPLLDSVLQGYNATVFAYGATGCGKTHTISGRPDDP 151
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 62.1 bits (144), Expect = 4e-11
Identities = 28/59 (47%), Positives = 36/59 (61%)
Frame = +3
Query: 270 VFDSNTSQMDIYVQTASPIVEQVLKGYNGTIFAYGQTGTXKTYTMAGSSTDPELRGIIP 446
VF + DIY ++ +V V GYNG +FAYG TGT KTY+M G+ +P GIIP
Sbjct: 184 VFGMESKNYDIYKRSVKSVVRNVFSGYNGIVFAYGMTGTGKTYSMQGTENEP---GIIP 239
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 58.8 bits (136), Expect = 4e-10
Identities = 26/59 (44%), Positives = 37/59 (62%)
Frame = +3
Query: 270 VFDSNTSQMDIYVQTASPIVEQVLKGYNGTIFAYGQTGTXKTYTMAGSSTDPELRGIIP 446
VF +++Q DI+ + V+ + GYNGT+ AYGQTG+ KTYTM G + E G+ P
Sbjct: 50 VFHPSSTQNDIFSYSIESTVDDLFLGYNGTVLAYGQTGSGKTYTMMGIENNFEKEGMTP 108
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 48.0 bits (109), Expect = 7e-07
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 285 TSQMDIYVQTASPIVEQVLKGYNGTIFAYGQTGTXKTYTMAGSSTDPELRGIIPN 449
+ Q D+Y T +V+ +L+G+N YGQ GT KTY++ G P GIIP+
Sbjct: 78 SGQEDVYESTGPLLVKSILEGFNSCFITYGQKGTGKTYSVVGLRGQP---GIIPH 129
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 47.6 bits (108), Expect = 9e-07
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +3
Query: 270 VFDSNTSQMDIYVQTASPIVEQVLKGYNGTIFAYGQTGTXKTYTMAGSSTDPELRGIIPN 449
VF T+ D++ + S +++ + GYN IFAYGQTG+ KT+TM+ ++ G+IP+
Sbjct: 530 VFSPETTNEDVFNEL-SQLIQSAMDGYNVCIFAYGQTGSGKTHTMSSNT------GMIPS 582
Query: 450 S 452
S
Sbjct: 583 S 583
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 44.8 bits (101), Expect = 6e-06
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 270 VFDSNTSQMDIYVQTASPIVEQVLKGYNGTIFAYGQTGTXKTYTMA 407
VF + ++ + S +++ + GYN +IFAYGQTG+ KTYTM+
Sbjct: 542 VFAPESDNSSVF-EEISQLIQSAIDGYNVSIFAYGQTGSGKTYTMS 586
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 38.7 bits (86), Expect = 4e-04
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 270 VFDSNTSQMDIYVQTASPIVEQVLKGYNGT-IFAYGQTGTXKTYTMAGSSTDP 425
VF + +Q+D++ +P++ L N T +F G +G KTYT+ G S P
Sbjct: 59 VFPPSCTQLDVFSTICAPLIADSLVNMNDTLLFTLGVSGAGKTYTLFGPSDRP 111
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 454 NEFGMIPLSSGSVLL--PAIV*VFXVPVCPY 368
N+FG+IP+ GS LL P + P+C Y
Sbjct: 384 NDFGLIPVIDGSSLLVTPLSLCNIPPPMCRY 414
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 326 CRASPQRVQRHYIRVRADGNXEDLYNG 406
CR P+ + Y ADG LYNG
Sbjct: 423 CRIPPETMASLYCGPEADGKYVCLYNG 449
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 341 EDLLDNRAGRLDVYVHLTGVRVEDSIVSITRGGSGGVTLF--LVTAT-VPFTE 192
E L+ + +Y+ +R ED++ + + S G+TL+ VT+T FTE
Sbjct: 145 EYLIAKLTDNIQIYIERIHLRFEDNLSDLEKPYSLGLTLYSLRVTSTDASFTE 197
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 54 RSFGVHKNARSRALGSDRRECSGGGSRAAHGPEGENGRLLQLRVRRFRER 203
++ G KN R RA +RR+ R + ++ + Q +++R RE+
Sbjct: 6 KNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREK 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,966
Number of Sequences: 5004
Number of extensions: 34769
Number of successful extensions: 109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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