Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1673X
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.51 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   0.68 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 171 GAVHFLPLVHGPHANHHPNILDGRSRELCFGH 76
           G V+ L   H  HANHH  +  G S  LC  H
Sbjct: 271 GGVYHLDNHHVHHANHHAIL--GHSGFLCERH 300


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 177 IVGAVHFLPLVHGPHANHHPNILDGRSRELCFGHFCGLRSSGTYSXDSN 31
           + G + F+P+  G H  + P +LD    E      C L  + TY+  S+
Sbjct: 152 LAGLISFVPISLGLHRANEPVVLDDSKEE---HPTCALDLTPTYAVVSS 197


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 202  GTVAVTRNNVTPPEPPRVMLTM 267
            GTV+V +    PP  P+  LT+
Sbjct: 1275 GTVSVPQQQQLPPSSPQPRLTV 1296


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = +1

Query: 166 GSYNCVSVDSVNGTVAVTRNNVTPPEPPRVMLTMLSSTLTP 288
           G Y C+   S   T   +        PP ++ + +  TL P
Sbjct: 395 GMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQP 435


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = +1

Query: 166 GSYNCVSVDSVNGTVAVTRNNVTPPEPPRVMLTMLSSTLTP 288
           G Y C+   S   T   +        PP ++ + +  TL P
Sbjct: 395 GMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQP 435


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 32  FESXEYVPELRSPQKCPK 85
           F+S +Y+  ++SP   P+
Sbjct: 316 FQSTQYIRHIKSPYHTPE 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,270
Number of Sequences: 438
Number of extensions: 2553
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)