Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1672X
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    29   0.61 
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    27   2.5  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   3.3  
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po...    25   5.7  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    25   10.0 

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 327 DIGPQKGAPNQRENSKRKKKRLLQNYLMIYLEKQK 431
           D  PQ  APN   +++ +K R+  NY + Y+ K K
Sbjct: 233 DSQPQPSAPNLVSSTENEKPRVDFNYAIAYMNKVK 267


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 282 RETSCDVKSVHLRKDDIGPQKGAPNQRENSKRKKK 386
           +E   ++  VH +KD   P+K   +Q+E S++KKK
Sbjct: 47  KEVIYELPEVHEKKDK-KPEKRKKDQKEASEKKKK 80


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 200 FQILLPK-PILNCSWNCRR 147
           F  + PK PI+ CSWNC R
Sbjct: 832 FLHIQPKEPIIFCSWNCMR 850


>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 24  TRHALHGVTWPVSNPKTL 77
           ++H  H + +P+SNP TL
Sbjct: 69  SKHVKHPIIFPISNPTTL 86


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/66 (19%), Positives = 30/66 (45%)
 Frame = +3

Query: 186 EQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDIGPQKGAPNQRE 365
           ++D++ +  +EK  ++   ++E       K K+E          RK +      +P +++
Sbjct: 442 QEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKK 501

Query: 366 NSKRKK 383
            SK+ K
Sbjct: 502 KSKKSK 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,570
Number of Sequences: 5004
Number of extensions: 37970
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)