Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1672X
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484...    38   0.004
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819...    37   0.009
02_05_1280 - 35434165-35434392,35434639-35434800,35435241-354353...    29   2.5  
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520...    27   7.7  

>03_03_0168 -
           15047383-15047847,15048085-15048192,15048313-15048464,
           15048555-15048752,15049553-15050856,15051281-15051354,
           15051458-15051492,15052853-15053015
          Length = 832

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +2

Query: 404 LDDLFRKTKTTPCIYWLPLSAETV 475
           LDDLFRKT ++P IY+LPLS E V
Sbjct: 796 LDDLFRKTHSSPRIYYLPLSEEEV 819


>07_03_1339 +
           25879246-25881154,25881502-25881696,25881777-25881928,
           25882147-25882607,25883723-25883810,25884066-25884135,
           25884288-25884361,25884456-25884524,25884647-25884724,
           25884946-25885070,25885168-25885240,25885508-25885566,
           25885650-25886027,25886134-25886236,25886332-25886544
          Length = 1348

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +2

Query: 404 LDDLFRKTKTTPCIYWLPLSAETV 475
           LDDLFRKT+ +P IY++P+S E V
Sbjct: 869 LDDLFRKTQASPRIYYMPVSEEVV 892


>02_05_1280 -
           35434165-35434392,35434639-35434800,35435241-35435372,
           35436048-35436115,35436719-35437313
          Length = 394

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 143 STFGNSRNS*GLASGARSEKRGRSGKVMGA*RNYEGVDVGK 265
           S FG+   S G  SGA +EKRGR G+  G+ +  +   +GK
Sbjct: 161 SGFGSGAGSGGSGSGALTEKRGR-GRPPGSGKMQQLASLGK 200


>03_06_0326 +
           33150599-33150907,33151013-33151104,33151961-33152057,
           33152585-33152656,33152750-33152812,33152905-33153045,
           33153603-33153698,33154120-33154404,33154692-33154851,
           33154947-33155089,33155688-33155861,33156386-33156652,
           33156737-33156856
          Length = 672

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 183 REQDLKREAEVEKSWERKGTMREWM*AKMIKTKR-ETSCDVKSVHLRKDDIGPQKGAPNQ 359
           R Q  +  ++ E++ +  G+ R        K++R +T     +   +  D G   G   +
Sbjct: 17  RRQRSRSPSDSEEASDSSGSPRRSRSRNRRKSRRRDTPSSSDASDSQASDSGSDSGGRVR 76

Query: 360 RENSKRKKKRLLQNYLMIYLEKQKQ 434
           R +  RKK  + +  ++ Y+ K+ Q
Sbjct: 77  RRSGSRKKGEVTEEQIVEYMAKKAQ 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,841
Number of Sequences: 37544
Number of extensions: 237474
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)