Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1672X
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     49   3e-06
SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    30   1.1  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      30   1.5  
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       29   2.6  
SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)                    28   4.5  
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)                  28   5.9  
SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)                   28   5.9  

>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +2

Query: 401  LLDDLFRKTKTTPCIYWLPLSAE 469
            LLD LFRKTKTTPC+YWLPL+ E
Sbjct: 952  LLDSLFRKTKTTPCLYWLPLTTE 974



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +3

Query: 15  AVETRHALHGVTWPVSNPKTLHVDFS 92
           AV TR ALHGV WP ++PK L VDF+
Sbjct: 874 AVATRAALHGVKWPPTSPKILSVDFA 899


>SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 22/83 (26%), Positives = 43/83 (51%)
 Frame = +3

Query: 183 REQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDIGPQKGAPNQR 362
           RE+  +++ E ++  E++   RE   A+  K + E    V+S+HL K+ +        + 
Sbjct: 216 REEKRRKKKEEQERLEQQRRQREQRIAEKRK-RLEEQRKVESLHLLKELLKRVADKRAEE 274

Query: 363 ENSKRKKKRLLQNYLMIYLEKQK 431
           E  KRK+++ L+    I  +K+K
Sbjct: 275 EEEKRKREKELEMLRQIEEKKRK 297


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 234  YAPMTFPLLPLFSDLAPEANPQLFLELPKVEHSLLPH 124
            + P T PL   F+ L P+AN    L  P+ +H +LPH
Sbjct: 1193 HIPQTRPLH--FTPLTPDANTAHHLTYPRRDHCVLPH 1227



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 228  PMTFPLLPLFSDLAPEANPQLFLELPKVEHSLLPH 124
            P T PL    + L PEA    +L  P+++H  LPH
Sbjct: 1059 PKTRPLRT--TSLTPEATFAHYLTCPRLDHCALPH 1091


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 351 PNQRENSKRKKKRLLQNYLMIYLEKQKQLHVFTG 452
           P+++ +   +KK L +NY+  YLE  ++L++  G
Sbjct: 97  PSEKSHEVARKKNLYKNYITDYLEPGRKLNISDG 130


>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/65 (21%), Positives = 35/65 (53%)
 Frame = +3

Query: 180 LREQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDIGPQKGAPNQ 359
           ++ +++K +    K+ +RK    + M  K +KTK   + D+K+ +++  +   +    N+
Sbjct: 56  MKTKNIKTKKNTTKNMKRKNMKTKNMETKNVKTKNMKTKDMKTKNIKTKNNTTKNMKTNK 115

Query: 360 RENSK 374
           +E+ K
Sbjct: 116 KEDEK 120


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 315  LRKDDIGPQKGAPNQRENSKRKKKRLLQNYLMIYLEK 425
            ++ +++ P+KG P +RE    ++K L++  L I  EK
Sbjct: 5090 IKVEEVKPKKGKPTEREAKPFEEKPLIEEELPISAEK 5126


>SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 273 KTKR-ETSCDVKSVHLRKDDIGPQKGAPNQRENSKRKKKR 389
           KT+R ET CDV +V+  +     QK     R+N++R+ ++
Sbjct: 226 KTRRGETGCDVSAVNGHEHKDSMQKSGVTWRQNNRRRLRK 265


>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 186 EQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDIGPQKGAPNQRE 365
           E+D ++E ++ K  + K   R+ + A    ++ E S        RKD     K   N+ +
Sbjct: 147 EEDERQEKKIRKQKQEK-RKRKTVKADFNSSEEEVSSQKTKASSRKDQKKMNKQMANKGK 205

Query: 366 NSKRKKKRLLQN 401
            +K KKK +  N
Sbjct: 206 GAKSKKKTIESN 217


>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
          Length = 1270

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 168 LFLELPKVEHSLLPHWIMLCQMLLLLKSPH--VKSLDLIQAMSPHAR 34
           L +   ++ H +LPH+  LC M  + +  H  +++ D +   SP  R
Sbjct: 637 LLIHTCRILHRILPHYTPLCGMFFIGRFKHLLIENADYVSFGSPKIR 683


>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
          Length = 918

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 319 EKTTSDPRKEPRTSEKIQKERRRGS 393
           +K   DPR +PR++E I  + +R S
Sbjct: 868 DKPKGDPRSDPRSAESIMMQMKRSS 892


>SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)
          Length = 444

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 165 TVEDWLREQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETS-CDVKSVHLRKDDI-GP 338
           T ++WL+ ++ K++ E+EK  E +   R+ M  +M K K   S  D K    +K    GP
Sbjct: 351 TFDEWLQAKNEKKQREIEKKKEEEA--RQQMEREMRKAKTGKSYADWKQAKQKKQQSPGP 408

Query: 339 Q 341
           +
Sbjct: 409 E 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,013
Number of Sequences: 59808
Number of extensions: 284076
Number of successful extensions: 825
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)