Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1672X
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved olig...    31   0.43 
AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical ...    31   0.74 
AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical ...    30   0.98 
AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical...    30   0.98 
Z22174-3|CAE17880.1|  125|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z73969-20|CAA98241.1|  643|Caenorhabditis elegans Hypothetical p...    27   6.9  
U21487-1|AAA96949.1|  643|Caenorhabditis elegans ribonucleoprote...    27   6.9  
U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U14635-6|AAP86617.1|  517|Caenorhabditis elegans Hypothetical pr...    27   6.9  
L41729-1|AAC41575.1|  643|Caenorhabditis elegans Ro ribonucleopr...    27   6.9  
AL021479-8|CAA16325.1|  643|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z75550-4|CAA99923.2|  335|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 5 protein.
          Length = 580

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 404 LDDLFRKTKTTPCIYWLPLSAETV 475
           LD LF+KT   P IY+LPL+ E +
Sbjct: 517 LDQLFKKTVALPPIYYLPLTEEQI 540


>AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical
           protein F49H12.5 protein.
          Length = 257

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +3

Query: 183 REQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDIGPQKGAPNQR 362
           +E+  K E +VEK  E+K   ++    +  + K +   D K    +K+D   +K   +++
Sbjct: 176 KEEAKKEEKKVEKKEEKKDKKKDEKKEEKKEKKEDKKKDEKKKDKKKEDKKDKKDKKDKK 235

Query: 363 ENSKRKKKR 389
           +   +K+K+
Sbjct: 236 DKKDKKEKK 244


>AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical
           protein C23H5.11 protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -2

Query: 221 LFHF-----CLSFQILLPKPILNCSWNCRRWSTLCFL 126
           LFHF     CL F I L   +LNC   CRRWS++ ++
Sbjct: 101 LFHFVISTLCLCFTIRLLL-LLNCIRRCRRWSSVSWV 136


>AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical
           protein Y41D4B.11 protein.
          Length = 349

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 183 REQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDI--GPQKGAPN 356
           REQ+ +R  EVEK  E+K   +  M   + K + E S D   V  ++  I    +KG   
Sbjct: 162 REQEARRLEEVEKLKEQKKAEKRKMKEALEKEEEEESFDEDEVSEKRAKIEKSTEKGGSE 221

Query: 357 QRENSKRKKKRLLQNYLMIYLEKQKQ 434
           +      KK R  +       ++QK+
Sbjct: 222 KATTKLSKKDRRKETLKARKSDEQKR 247


>Z22174-3|CAE17880.1|  125|Caenorhabditis elegans Hypothetical
           protein K01B6.4 protein.
          Length = 125

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 288 TSCDVKSVHLRKDDIGPQKGAPNQRENSKRKK 383
           T CD++SV +RKDD   ++    +++N K  K
Sbjct: 19  TDCDLQSVTIRKDDHNTKEDPVTEKKNLKVSK 50


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +3

Query: 186 EQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDIGPQKGAPNQRE 365
           E++ K E + E   E+K   +E         K+E S D K    ++D     K   N+ +
Sbjct: 77  EKEKKEEEKKEDGHEKKEDKKEDKKENENDEKKEKSKDDKKEESKEDKKEKTKTEDNEGK 136

Query: 366 NSKRKKKR 389
           N ++KK++
Sbjct: 137 NEEKKKEK 144


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 316 RWTLFTSQLVSLFVFIIFAYIHSLIVPLRS 227
           RW+LF   +V  F+F++  ++ SL + + S
Sbjct: 624 RWSLFVLHIVFDFLFLVVGFVTSLTIAIMS 653


>Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical
           protein T07G12.4 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 156 LPKVEHSLLPHWIMLCQMLLLL 91
           +P +EH +  HWI + ++L+L+
Sbjct: 103 IPDIEHKVSLHWISIIEILILI 124


>Z73969-20|CAA98241.1|  643|Caenorhabditis elegans Hypothetical
           protein C12D8.11 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 183 REQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLR 320
           R+  ++  AEVEK W++K     +   ++IK ++  + ++   +L+
Sbjct: 294 RKMSVEEVAEVEKVWDKKALKLPYTEEQLIKEEQSRALNLVEAYLK 339


>U21487-1|AAA96949.1|  643|Caenorhabditis elegans ribonucleoprotein
           Ro autoantigenhomolog protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 183 REQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLR 320
           R+  ++  AEVEK W++K     +   ++IK ++  + ++   +L+
Sbjct: 294 RKMSVEEVAEVEKVWDKKALKLPYTEEQLIKEEQSRALNLVEAYLK 339


>U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical
           protein C27H5.4a protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = -3

Query: 343 FWGPMSSFLRWTLFTSQLVSLFVF------IIFAYIHSLIVPLRSHD 221
           FW P S+ + W      LVSLF++      ++ AY    +   RSH+
Sbjct: 101 FWFPWSTSIGWVTALHLLVSLFIYDTLLTLVLSAYCGLCVENSRSHE 147


>U14635-6|AAP86617.1|  517|Caenorhabditis elegans Hypothetical
           protein C27H5.4b protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = -3

Query: 343 FWGPMSSFLRWTLFTSQLVSLFVF------IIFAYIHSLIVPLRSHD 221
           FW P S+ + W      LVSLF++      ++ AY    +   RSH+
Sbjct: 97  FWFPWSTSIGWVTALHLLVSLFIYDTLLTLVLSAYCGLCVENSRSHE 143


>L41729-1|AAC41575.1|  643|Caenorhabditis elegans Ro
           ribonucleoprotein autoantigen protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 183 REQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLR 320
           R+  ++  AEVEK W++K     +   ++IK ++  + ++   +L+
Sbjct: 294 RKMSVEEVAEVEKVWDKKALKLPYTEEQLIKEEQSRALNLVEAYLK 339


>AL021479-8|CAA16325.1|  643|Caenorhabditis elegans Hypothetical
           protein C12D8.11 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 183 REQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLR 320
           R+  ++  AEVEK W++K     +   ++IK ++  + ++   +L+
Sbjct: 294 RKMSVEEVAEVEKVWDKKALKLPYTEEQLIKEEQSRALNLVEAYLK 339


>Z75550-4|CAA99923.2|  335|Caenorhabditis elegans Hypothetical
           protein T22C1.6 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 216 EKSWERKGTMREWM*AKMIKTKRET-SCDVKSVHLRKDDIGPQKGAPNQRENSKRKKKRL 392
           EK WE  G  ++ +  K++  K E+ S  VK   + KD++         R     K ++ 
Sbjct: 168 EKYWEEYGKTKD-LEIKLLTAKLESASIQVKKSGMEKDELAKIMLEETARVGGALKTEKA 226

Query: 393 LQNYLMIYLEKQKQL 437
           L+  +  Y  K  +L
Sbjct: 227 LREQVQEYSAKYSEL 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,554,850
Number of Sequences: 27780
Number of extensions: 214591
Number of successful extensions: 689
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)