Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1672X
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39680.1 68417.m05614 SAP domain-containing protein contains ...    38   0.003
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr...    31   0.39 
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    31   0.69 
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ...    27   6.4  
At5g62390.1 68418.m07830 calmodulin-binding family protein conta...    27   8.5  
At5g16280.1 68418.m01901 expressed protein                             27   8.5  
At1g23230.1 68414.m02906 expressed protein                             27   8.5  

>At4g39680.1 68417.m05614 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 633

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +2

Query: 404 LDDLFRKTKTTPCIYWLPLSAETV 475
           LDDLF+KTK  P IY+LPLS E V
Sbjct: 600 LDDLFKKTKAIPRIYYLPLSEEQV 623


>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
           protein-related contains weak hit to Pfam profile:
           PF00097 zinc finger, C3HC4 type (RING finger); weak
           similarity to RING finger protein 8 (Swiss-Prot:O76064)
           [Homo sapiens]
          Length = 738

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +3

Query: 189 QDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDIGPQKGAPNQREN 368
           QDLK++ +  K W +K  M+        K   E S ++KS+   +++I   K     RE+
Sbjct: 406 QDLKKQLKERKDWAQKKAMQAAQ-----KVSDELS-ELKSLRSEREEIQRVKKGKQTRED 459

Query: 369 SKRKKKRLLQNYL 407
           S  KK   ++N L
Sbjct: 460 STLKKLSEMENAL 472


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = +3

Query: 171 EDWLREQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDIGPQKGA 350
           E + RE D  RE EV      + T  +      IK KR+    V+   L  D+   ++  
Sbjct: 57  ETFAREDDEIRENEVGNGGSSEKTDTK------IKKKRKRDDAVEVDELEGDEGTKEEQK 110

Query: 351 PNQRENSKRKKKR 389
           P +++N K+KKKR
Sbjct: 111 PQKKKNKKKKKKR 123


>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
           protein similar to RNA-binding protein (Hermes) from
           {Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
           {Mus musculus} SP|Q9WVB0; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 124

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 3   NFSQAVETRHALHGVTWPVSNPKTLHVDFSTTEAFDK 113
           +   AV   HAL+G+ + +    TLH+D + +    K
Sbjct: 82  DLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSK 118


>At5g62390.1 68418.m07830 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 446

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +3

Query: 186 EQDLKREAEVEKSWERKGTMREWM*AKMIKTKRETSCDVKSVHLRKDDIGPQKGAPNQRE 365
           E+  K EAE+E S ERK     W     IK  ++    +K   L+K+    +  A  + E
Sbjct: 140 ERKYKLEAEIEGSGERK---YRW--TTEIKGGKKDEEGLKLAALKKEKAKAKAIAAAEAE 194

Query: 366 NSKRKKKRLLQNY 404
             K K K+   N+
Sbjct: 195 KKKNKNKKKSYNW 207


>At5g16280.1 68418.m01901 expressed protein
          Length = 1265

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 45   VTWPVSNPKTLHVDFSTT 98
            ++W +  P+T+H DFST+
Sbjct: 1102 ISWSLDGPQTIHHDFSTS 1119


>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 174 DWLREQDLKREAEVEKSWERKGTMREWM 257
           +W R +DL  E  V KSW  + T+ EW+
Sbjct: 262 NWDR-RDLGTEDSVGKSWRSEKTLAEWL 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,838
Number of Sequences: 28952
Number of extensions: 197878
Number of successful extensions: 629
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)