Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1671X
         (589 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2SPZ5 Cluster: Response regulator containing a CheY-li...    36   0.53 
UniRef50_Q3LW35 Cluster: Nip7 putative ribosome biogenesis prote...    33   3.7  

>UniRef50_Q2SPZ5 Cluster: Response regulator containing a CheY-like
           receiver domain and a GGDEF domain; n=2;
           Gammaproteobacteria|Rep: Response regulator containing a
           CheY-like receiver domain and a GGDEF domain - Hahella
           chejuensis (strain KCTC 2396)
          Length = 462

 Score = 36.3 bits (80), Expect = 0.53
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = -1

Query: 277 KTRPYRSILITIIKLRNSRYSDATYFIHINRELVYRRFALKGLTKVNED 131
           K RPY  I + II L+N +Y D T+F  I R++  R+F ++ L K N D
Sbjct: 222 KGRPYW-IEMNIIPLKN-KYGDVTHFAAIERDVSERKFHIEQLEKRNND 268


>UniRef50_Q3LW35 Cluster: Nip7 putative ribosome biogenesis protein;
           n=1; Bigelowiella natans|Rep: Nip7 putative ribosome
           biogenesis protein - Bigelowiella natans (Pedinomonas
           minutissima) (Chlorarachnion sp.(strain CCMP 621))
          Length = 180

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +2

Query: 191 NVYKVRSVGIPTIAQFDYSY*DRPVRTCLSDINVFNKLILIFIND--HLKIILLGI 352
           N+YK+  + + T   F   +    +R   +DI +FNK+IL  IN+  H KI+ LGI
Sbjct: 15  NLYKILGLRLNTF--FKLLFKSNTLRIIKNDIFIFNKVILSEINEFSHSKILSLGI 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,386,460
Number of Sequences: 1657284
Number of extensions: 9859868
Number of successful extensions: 18123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18123
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)