Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1671X
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412...    29   2.1  
05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656     27   8.4  
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    27   8.4  

>09_04_0107 -
           14640097-14640348,14640472-14640701,14640805-14641215,
           14641481-14643831,14643927-14644093
          Length = 1136

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 155 FERETSIDQFSINVYKVRSVGIPTIAQ 235
           +E +  I+Q  + + KVRS+G+PTI +
Sbjct: 758 WEHQDLIEQLKLELKKVRSIGLPTILE 784


>05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656
          Length = 473

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 504 PIRDEGITYRARSYRSAVSPRGGEHPPL 587
           PIR++ +T    S   AV+  G EH P+
Sbjct: 106 PIREDEVTAMVESVHRAVTQPGSEHKPI 133


>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 574 SPPRGDTALRYDRARYVMPSSRIGYSLLEMQYFVDNDI 461
           SPP GD     D   YV+ S   G++L      V  D+
Sbjct: 803 SPPIGDEIWGMDEYHYVLDSEHFGWNLKNEMVIVCEDV 840


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,739
Number of Sequences: 37544
Number of extensions: 248952
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)