Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1670
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.40 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    25   0.40 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.9  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   6.5  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   6.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   6.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 446 VFYSSCHLISLSTKYCISSKLNL*R 520
           V+  SC   S +TKYC S K++L R
Sbjct: 284 VYRYSCRDCSYATKYCHSLKIHLRR 308


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 446 VFYSSCHLISLSTKYCISSKLNL*R 520
           V+  SC   S +TKYC S K++L R
Sbjct: 42  VYRYSCRDCSYATKYCHSLKIHLRR 66


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 470 LNDNYYKKQFDRLTIFFK 417
           +ND+  K++ DR+ IF++
Sbjct: 145 INDDLEKREKDRMDIFYE 162


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 138 SEW*WKSAIPAQHSEVAASHTNL 70
           SE  WK   P   SE    H NL
Sbjct: 4   SETLWKMKDPMSASETVQDHRNL 26


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 138 SEW*WKSAIPAQHSEVAASHTNL 70
           SE  WK   P   SE    H NL
Sbjct: 4   SETLWKMKDPMSASETVQDHRNL 26


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 471 YRYLQSIASPAN 506
           YR+ Q++A+PAN
Sbjct: 11  YRHQQAVAAPAN 22


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 471 YRYLQSIASPAN 506
           YR+ Q++A+PAN
Sbjct: 11  YRHQQAVAAPAN 22


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 536 YRPRSYRSAVSPRGGEH 586
           +RP +Y   ++  GG+H
Sbjct: 507 FRPNTYNRFLAATGGDH 523


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 486 SIASPAN*TYNAMRALHIGPGRTGARCHRV 575
           S  SPA+   NA   LHI   R    C  V
Sbjct: 40  SSGSPASVASNASAPLHIPAKRAAYDCEGV 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,979
Number of Sequences: 336
Number of extensions: 2872
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)