Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1670
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53260| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_41759| Best HMM Match : Ion_trans (HMM E-Value=1.1e-08)             28   7.2  
SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)                 28   7.2  
SB_49651| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)                27   9.6  
SB_41366| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_53260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 163 FERETSIDQFSINVYKVRSVGIPTIAQF--DYSIRYRPVRTCLSDINVFNKLILIFI 327
           F R  S    + N Y+V   G+P +A+F  D ++++R    C +D+N     +++F+
Sbjct: 60  FSRHVSFPDATRNAYRVTEQGLPKVAEFAMDAAVKFRDY--CANDLNTDVTKMMVFV 114


>SB_41759| Best HMM Match : Ion_trans (HMM E-Value=1.1e-08)
          Length = 276

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 308 LLKTLMSLRHVRTGRYLIL*SNCAIVGIPTLRTLYTLIENW 186
           LLKT   LR VR  R L   S   +  +  L  L+TL+ +W
Sbjct: 151 LLKTARLLRLVRVSRKLDRYSEYGLAVVILLTCLFTLVAHW 191


>SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)
          Length = 646

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 166 ERETSIDQFSINVYKVRSVGIPTIAQFDYSIRYRPVRTCLSDINV 300
           +R  S D  S+ V  +++    + A+++Y+  Y P+   + D +V
Sbjct: 562 QRHNSADLSSVEVQNIKNWSKESAARYEYTTSYTPIAEIIRDRDV 606


>SB_49651| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)
          Length = 342

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 623 TRSLCISSPIAAGVRPHAVTPRSGTTGADM*CPHRVIGLV 504
           +R + +++PI A + P A TPR  +T   M      + LV
Sbjct: 10  SRQIIVTTPITATLTPTAPTPRGRSTALAMWDTQETVSLV 49


>SB_41366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 623 TRSLCISSPIAAGVRPHAVTPRSGTTGADM*CPHRVIGLV 504
           +R + +++PI A + P A TPR  +T   M      + LV
Sbjct: 10  SRQIIVTTPITATLTPTAPTPRGRSTALAMWDTQETVSLV 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,298,581
Number of Sequences: 59808
Number of extensions: 343740
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)