Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1670
         (633 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060323-1|AAL25362.1|  241|Drosophila melanogaster GH20809p pro...    31   1.3  
X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    28   9.1  
AY071506-1|AAL49128.1|  460|Drosophila melanogaster RE56061p pro...    28   9.1  
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    28   9.1  
AE014297-3027|AAF55909.2|  460|Drosophila melanogaster CG31176-P...    28   9.1  

>AY060323-1|AAL25362.1|  241|Drosophila melanogaster GH20809p
           protein.
          Length = 241

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 121 LPLPLAIFIDFC*AFERETSIDQFSINVYKVRSVGIPTIAQFDYSIRYRPVR--TCLSDI 294
           + LP+   +  C  F   T I  F     K   + IP   +      YRP+   TCLS +
Sbjct: 3   IELPMCAVMRICLLFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQPSYRPISLLTCLSKL 62

Query: 295 NVFNKLILIFINDHLK 342
             F K +L+ I+ HLK
Sbjct: 63  --FEKGLLLRISPHLK 76


>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +1

Query: 121 LPLPLAIFIDFC*AFERETSIDQFSINVYKVRSVGIPTIAQFDYS-IRYRPVR--TCLSD 291
           + LP    +  C  F     +  F     K   V IP   +       YRP+   TCLS 
Sbjct: 461 IELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSK 520

Query: 292 INVFNKLILIFINDHLKI 345
           +  F K++L+ I+ HL+I
Sbjct: 521 L--FEKMLLLRISPHLRI 536


>AY071506-1|AAL49128.1|  460|Drosophila melanogaster RE56061p
           protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 513 YNAMRALHIGPGRTGARCHRVGA 581
           Y   R LH+ P RTG R H V A
Sbjct: 176 YRRGRRLHVNPPRTGIRSHSVDA 198


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +1

Query: 121 LPLPLAIFIDFC*AFERETSIDQFSINVYKVRSVGIPTIAQFDYS-IRYRPVR--TCLSD 291
           + LP    +  C  F     +  F     K   V IP   +       YRP+   TCLS 
Sbjct: 461 IELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSK 520

Query: 292 INVFNKLILIFINDHLKI 345
           +  F K++L+ I+ HL+I
Sbjct: 521 L--FEKMLLLRISPHLRI 536


>AE014297-3027|AAF55909.2|  460|Drosophila melanogaster CG31176-PA
           protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 513 YNAMRALHIGPGRTGARCHRVGA 581
           Y   R LH+ P RTG R H V A
Sbjct: 176 YRRGRRLHVNPPRTGIRSHSVDA 198


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,199,047
Number of Sequences: 53049
Number of extensions: 505717
Number of successful extensions: 1083
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)