Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1670
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15610.1 68414.m01876 hypothetical protein                          30   1.1  
At1g45207.2 68414.m05186 remorin family protein Since this genom...    28   4.5  
At5g26960.1 68418.m03217 kelch repeat-containing F-box family pr...    27   7.8  

>At1g15610.1 68414.m01876 hypothetical protein
          Length = 234

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = +2

Query: 143 SLTFVKPLSAKRR*TNSLLMCIKYVASEYRLLRSLIIVLGIDLYGRVLATLTFLIS*Y*Y 322
           SL  +   S+ R+ T+    CI+YV   ++    L ++ G+ L   ++A +  +I+    
Sbjct: 154 SLWHILTESSSRQDTSRHFCCIRYVLPNFQFTVQLFMLPGVSLVTALVAAIVTMINSLLS 213

Query: 323 L*TTI*KLFCWEFSFYV 373
           L   I  LF   FS+ +
Sbjct: 214 LFLVIIGLFALTFSWII 230


>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 614 LCISSPIAAGVRPHAVTPRSGTTGA 540
           L  SSP +AGV P  V+ R  TT A
Sbjct: 295 LTASSPFSAGVLPETVSSRGSTTAA 319


>At5g26960.1 68418.m03217 kelch repeat-containing F-box family
           protein predicted proteins, Arabidopsis thaliana and
           Oryza sativa; contains Pfam profiles PF01344: Kelch
           motif, PF00646: F-box domain
          Length = 413

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 276 PYRSIPNTIIKLRN-SRYSDATYFIHINRELVYRRFALKGLTKVN 145
           P  SIP+  +  R  SR   + YF+H+ R L   R +L  ++ V+
Sbjct: 60  PSSSIPSLAVVCRRWSRLLHSPYFLHLRRRLGLLRHSLFAISTVD 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,527,470
Number of Sequences: 28952
Number of extensions: 240832
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)