Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1669X
(515 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 98 9e-20
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 95 1e-18
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 86 5e-16
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 80 3e-14
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 78 1e-13
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 77 2e-13
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 77 3e-13
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 76 4e-13
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 76 4e-13
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 76 6e-13
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 72 9e-12
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 72 9e-12
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 70 3e-11
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 62 6e-09
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 62 7e-09
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 58 9e-08
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 58 2e-07
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 57 3e-07
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 51 2e-05
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 46 5e-04
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 41 0.015
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 40 0.025
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 40 0.034
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 40 0.034
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 40 0.045
UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole gen... 38 0.14
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 38 0.14
UniRef50_Q9UFE2 Cluster: Putative uncharacterized protein DKFZp4... 37 0.24
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 37 0.31
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 35 0.96
UniRef50_UPI0000F212F9 Cluster: PREDICTED: hypothetical protein;... 34 2.2
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 34 2.2
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 34 2.2
UniRef50_Q2S0X7 Cluster: Sensor protein; n=1; Salinibacter ruber... 33 2.9
UniRef50_A3HV43 Cluster: Sensor protein; n=1; Algoriphagus sp. P... 33 2.9
UniRef50_Q52PH1 Cluster: Golden2-like transcription factor; n=8;... 33 2.9
UniRef50_UPI0000E23B66 Cluster: PREDICTED: hypothetical protein,... 32 8.9
UniRef50_UPI00015A6D74 Cluster: Na(+)/H(+) exchange regulatory c... 32 8.9
UniRef50_Q4SGH5 Cluster: Chromosome undetermined SCAF14594, whol... 32 8.9
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 98.3 bits (234), Expect = 9e-20
Identities = 46/84 (54%), Positives = 50/84 (59%)
Frame = +2
Query: 257 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQA 436
RGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH +
Sbjct: 80 RGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMS 139
Query: 437 IGHIIEKIPGLPLVVADKVQEINK 508
GH IE++P LPLVV DKV+ K
Sbjct: 140 KGHRIEEVPELPLVVEDKVEGYKK 163
Score = 88.6 bits (210), Expect = 7e-17
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = +3
Query: 42 VGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 221
+ V+ E+ + +G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AGHQTSAESW
Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67
Query: 222 GTG 230
GTG
Sbjct: 68 GTG 70
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 94.7 bits (225), Expect = 1e-18
Identities = 43/84 (51%), Positives = 52/84 (61%)
Frame = +2
Query: 257 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQA 436
RGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH Q+
Sbjct: 83 RGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQS 142
Query: 437 IGHIIEKIPGLPLVVADKVQEINK 508
GH+I+ + PLVV+D+VQ++ K
Sbjct: 143 KGHVIDGVSEFPLVVSDEVQKVQK 166
Score = 79.4 bits (187), Expect = 4e-14
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +3
Query: 18 SIGSPTFSVGVFREE*DGAGSAKP-LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 194
S+G+ V V+ E+ + A LP VFKAPIRPD+VN+VH + +N+RQ Y VS+ A
Sbjct: 2 SLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELA 61
Query: 195 GHQTSAESWGTG 230
GHQTSAESWGTG
Sbjct: 62 GHQTSAESWGTG 73
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 85.8 bits (203), Expect = 5e-16
Identities = 38/64 (59%), Positives = 46/64 (71%)
Frame = +3
Query: 39 SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 218
+V V + G+ PLP VF +PIRPD+V VH M+KN RQPY VS++AGHQTSAES
Sbjct: 6 TVSVLSADGTATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQTSAES 65
Query: 219 WGTG 230
WGTG
Sbjct: 66 WGTG 69
Score = 76.6 bits (180), Expect = 3e-13
Identities = 36/80 (45%), Positives = 43/80 (53%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH A
Sbjct: 80 GGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLGQKRFATVSALAASGVPALLFAR 139
Query: 440 GHIIEKIPGLPLVVADKVQE 499
GH I ++ +PLV+ +V E
Sbjct: 140 GHQISEVAEVPLVINSEVFE 159
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 80.2 bits (189), Expect = 3e-14
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +3
Query: 45 GVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 224
GV+ ++ + + LP VF+AP+RPD+V+ VH + KN RQPY VS EAGHQTSAESWG
Sbjct: 126 GVYNDKSEPTDTQIRLPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWG 185
Query: 225 TG 230
TG
Sbjct: 186 TG 187
Score = 76.6 bits (180), Expect = 3e-13
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +2
Query: 257 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 355
RGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH
Sbjct: 197 RGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWH 229
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 78.2 bits (184), Expect = 1e-13
Identities = 34/75 (45%), Positives = 41/75 (54%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH A
Sbjct: 57 GGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATASALAASGSPALLMAR 116
Query: 440 GHIIEKIPGLPLVVA 484
GH + +P +PLV++
Sbjct: 117 GHNVSTVPEVPLVIS 131
Score = 35.9 bits (79), Expect = 0.55
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 156 KNSRQPYCVSKEAGHQTSAESWGTG 230
++++ V +AGHQTSAESWGTG
Sbjct: 22 ESTKDTLTVPNKAGHQTSAESWGTG 46
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 77.4 bits (182), Expect = 2e-13
Identities = 38/83 (45%), Positives = 43/83 (51%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
GGGT SG GAFGNMCRGGRMFAPTK +RRWH +
Sbjct: 80 GGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSVPSLVMSR 139
Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
GH I +P +PLVV D +Q K
Sbjct: 140 GHQIGNVPEVPLVVEDSIQGYEK 162
Score = 68.1 bits (159), Expect = 1e-10
Identities = 33/64 (51%), Positives = 40/64 (62%)
Frame = +3
Query: 39 SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 218
SV V+ D PLP VF APIR D+V VH +M+KNSRQ Y V++ +G SA S
Sbjct: 6 SVSVYSASSDSVVGTCPLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65
Query: 219 WGTG 230
WGTG
Sbjct: 66 WGTG 69
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 76.6 bits (180), Expect = 3e-13
Identities = 36/81 (44%), Positives = 45/81 (55%)
Frame = +2
Query: 266 GTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAIGH 445
GT RSGQGAFGNMCRGG MF+P K +RR+H A GH
Sbjct: 84 GTSRSGQGAFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVAAAIAATGCPSLVMARGH 143
Query: 446 IIEKIPGLPLVVADKVQEINK 508
I +P LPLV+++++Q INK
Sbjct: 144 RINNVPELPLVISNEIQNINK 164
Score = 69.7 bits (163), Expect = 4e-11
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +3
Query: 72 AGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
A S+ PLP VF +P+R DLV V +MSKN RQ Y VS +AGHQ SAESWGTG
Sbjct: 19 ATSSIPLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAGHQHSAESWGTG 71
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 76.2 bits (179), Expect = 4e-13
Identities = 33/84 (39%), Positives = 43/84 (51%)
Frame = +2
Query: 257 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQA 436
+GGGTHRSGQ A+ N CR G MFAPT+ WR WH +
Sbjct: 79 KGGGTHRSGQAAYANFCRAGGMFAPTRTWRHWHRKINLKEKRLALAVSVAATASVPLVMS 138
Query: 437 IGHIIEKIPGLPLVVADKVQEINK 508
GH +E +P LPLV+ D ++ + K
Sbjct: 139 RGHRVESVPELPLVLDDTMETLTK 162
Score = 66.9 bits (156), Expect = 3e-10
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
+P VF P+R DLV+ VH +MSKN RQ Y +S+ +G+QTSA SWGTG
Sbjct: 23 MPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQTSARSWGTG 69
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 76.2 bits (179), Expect = 4e-13
Identities = 36/83 (43%), Positives = 41/83 (49%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
G GTHRSGQ AFGN CR GRM P K WRRWH A
Sbjct: 82 GSGTHRSGQAAFGNQCRKGRMSLPIKVWRRWHRRVNIKQKRHAAATAVAATGIVPLVLAR 141
Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
GH I ++P +PLVV DK++ K
Sbjct: 142 GHRISQVPQIPLVVEDKIESYEK 164
Score = 68.1 bits (159), Expect = 1e-10
Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Frame = +3
Query: 42 VGVFREE*DGAGSAK--PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 215
V VF + +AK PLP VF+ PIRPD+V+ VH +++KN RQ + V+ +AG Q SAE
Sbjct: 7 VSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHSAE 66
Query: 216 SWGTG 230
SWGTG
Sbjct: 67 SWGTG 71
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 75.8 bits (178), Expect = 6e-13
Identities = 33/84 (39%), Positives = 45/84 (53%)
Frame = +2
Query: 257 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQA 436
+GGGTHR+GQ A+ N CR G M+APT+ WRRWH +
Sbjct: 79 KGGGTHRAGQAAYANFCRAGGMYAPTRVWRRWHRKVNLKEKRQALASALAATAVVPVVMS 138
Query: 437 IGHIIEKIPGLPLVVADKVQEINK 508
GH IE + +P+VV D +++INK
Sbjct: 139 RGHRIEALREVPMVVDDAIEQINK 162
Score = 68.5 bits (160), Expect = 8e-11
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
+P VF AP+R DLV VH +MSKN RQ Y VSK +G+QTSA SWGTG
Sbjct: 23 MPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTSARSWGTG 69
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 71.7 bits (168), Expect = 9e-12
Identities = 34/83 (40%), Positives = 42/83 (50%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
GGGTHR+GQ AFGNMCRGG MF PTK WRRW A
Sbjct: 81 GGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKINLKEKRYAVCSSIAASGITSLVLAR 140
Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
GH I + +PLV ++ ++ + K
Sbjct: 141 GHRISNLKEVPLVASNDIESMQK 163
Score = 62.5 bits (145), Expect = 6e-09
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
+P VF+ PIR DL+ + +MSKN R PY V AG++TSAESWGTG
Sbjct: 24 IPVVFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAGYETSAESWGTG 70
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 71.7 bits (168), Expect = 9e-12
Identities = 34/83 (40%), Positives = 42/83 (50%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
G GT R+GQ AF N RGG M++P K WRRWH A
Sbjct: 81 GSGTSRNGQAAFANSARGGHMYSPLKVWRRWHRMVNVTQRRFAMCSAIAASSNPSLVLAR 140
Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
GH I+ +P LPLVV+D V++I K
Sbjct: 141 GHKIDNVPELPLVVSDDVEQIKK 163
Score = 58.8 bits (136), Expect = 7e-08
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Frame = +3
Query: 66 DG-AGSAKPLPFVFK-APIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
DG A +P V + +PIRPD+V+ VH++++KN RQP+ AGHQ SAESWGTG
Sbjct: 14 DGKARDTTAVPSVIRYSPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSAESWGTG 70
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 70.1 bits (164), Expect = 3e-11
Identities = 31/83 (37%), Positives = 42/83 (50%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
G GTHRSGQGA N CRGGR+F PT WR+WH +
Sbjct: 76 GSGTHRSGQGAIANFCRGGRIFNPTTIWRKWHHKINKNQRKSAIFSAIASSSIVSIIVSR 135
Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
G+ ++ IP +P V+ D +++I K
Sbjct: 136 GYRVKTIPEIPFVIEDSIEKIPK 158
Score = 54.8 bits (126), Expect = 1e-06
Identities = 27/47 (57%), Positives = 31/47 (65%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
+P VF + IR D+V VH +M KN RQ Y VS AG TSA SWGTG
Sbjct: 19 IPKVFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWGTG 65
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 62.5 bits (145), Expect = 6e-09
Identities = 31/84 (36%), Positives = 40/84 (47%)
Frame = +2
Query: 257 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQA 436
+GGGT R+GQGAF N CR GRM PTK RRW +A
Sbjct: 77 KGGGTRRAGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAMAVAASAQASLVEA 136
Query: 437 IGHIIEKIPGLPLVVADKVQEINK 508
GH I + LP++V+D + + K
Sbjct: 137 RGHRISDVKMLPIIVSDDIAKARK 160
Score = 57.2 bits (132), Expect = 2e-07
Identities = 28/47 (59%), Positives = 30/47 (63%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
LP VF PIR DLV + +RQPY VSK AG Q SAESWGTG
Sbjct: 21 LPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAESWGTG 67
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 62.1 bits (144), Expect = 7e-09
Identities = 32/96 (33%), Positives = 43/96 (44%)
Frame = +2
Query: 221 GYRTCCCPNSAFRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 400
G C P G G++R+GQGA+ N CRGG F P RRW
Sbjct: 67 GRAKACVPR--VNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIASA 124
Query: 401 XXXXXXXXXXQAIGHIIEKIPGLPLVVADKVQEINK 508
QA GH++ ++ +P+VV D VQEI +
Sbjct: 125 IAATAVVPLVQARGHVLGEVKEVPIVVVDAVQEIKR 160
Score = 54.8 bits (126), Expect = 1e-06
Identities = 27/64 (42%), Positives = 42/64 (65%)
Frame = +3
Query: 39 SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 218
+V V +E A + + LP VF PIR ++V +V+V+++KN++QP+ AG + SA S
Sbjct: 5 TVNVLTQEGQKASTIE-LPKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAIS 63
Query: 219 WGTG 230
WGTG
Sbjct: 64 WGTG 67
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 58.4 bits (135), Expect = 9e-08
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +3
Query: 87 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
P P VF P+RPD++N VH + K R PY VS+ AG Q +A SWG G
Sbjct: 19 PRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTAHSWGPG 66
Score = 38.7 bits (86), Expect = 0.078
Identities = 22/67 (32%), Positives = 26/67 (38%)
Frame = +2
Query: 281 GQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAIGHIIEKI 460
G GA+ N RGG M PT RRW +A GH I +
Sbjct: 78 GIGAYANFARGGHMAHPTTVIRRWCRKVNLNQRRYAVASALAASANAALVEARGHRIADV 137
Query: 461 PGLPLVV 481
P +PLVV
Sbjct: 138 PSIPLVV 144
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 57.6 bits (133), Expect = 2e-07
Identities = 29/47 (61%), Positives = 35/47 (74%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
LP VF APIR D+V+ V+ + SKN+RQP VS +AG Q SA SWGTG
Sbjct: 24 LPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQHSAISWGTG 70
Score = 56.0 bits (129), Expect = 5e-07
Identities = 29/77 (37%), Positives = 36/77 (46%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
G G+ R+GQGAFGNM R G MF+P K +R+W A
Sbjct: 81 GSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSAR 140
Query: 440 GHIIEKIPGLPLVVADK 490
GH I +P +PLVV K
Sbjct: 141 GHHIAGVPQIPLVVNSK 157
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 56.8 bits (131), Expect = 3e-07
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 123 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
D+VN VH ++ KN QPY VS+ AG+QTSAESWGTG
Sbjct: 25 DVVNFVHSNLHKNDSQPYAVSESAGYQTSAESWGTG 60
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 50.8 bits (116), Expect = 2e-05
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
LP F+ P+R DL+ ++ N RQPY AG +TSAESWG G
Sbjct: 18 LPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAG 64
Score = 33.1 bits (72), Expect = 3.9
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +2
Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
GH+I+ +P LP+VV D+++ +NK
Sbjct: 135 GHVIDDVPHLPVVVVDELKSLNK 157
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 46.0 bits (104), Expect = 5e-04
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = +2
Query: 257 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQA 436
+G GT ++GQGA NMCRGGR+F ++W+ +
Sbjct: 81 KGSGTRKAGQGALANMCRGGRLFGNRNYSKKWNIKTNRKVKVSAFKTALLSTLFETLVVS 140
Query: 437 IGHIIEKIPGLPLVVADKVQEINKPN 514
GH ++ + P+++ ++ I P+
Sbjct: 141 RGHSLKDVKNFPMIIDSILKYIWHPS 166
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 41.1 bits (92), Expect = 0.015
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +1
Query: 265 WYP*VRSGCLR*HVSWWTYVRPHEALAALAPSRQP 369
W VR C+R HV WW +VR E L LAP QP
Sbjct: 134 WNEHVRRRCVRQHVPWWPHVRADEDLPPLAPQDQP 168
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 40.3 bits (90), Expect = 0.025
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 224
LP +F P+R DL+ V ++ +S QP AG +TSAES+G
Sbjct: 25 LPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFG 69
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 39.9 bits (89), Expect = 0.034
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 284 QGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAIGHIIEKIP 463
+G F RGGR P K ++ H A GH++EK+P
Sbjct: 106 RGCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVP 165
Query: 464 GLPLVVADKVQEINK 508
LP+VV ++IN+
Sbjct: 166 SLPVVVVGDAEKINR 180
Score = 37.5 bits (83), Expect = 0.18
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 66 DGAGSAK-PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
DGA A P F PIRPDL+ ++S QP V + AG + S ES+G G
Sbjct: 35 DGAYVADIEAPLHFLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVG 90
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 39.9 bits (89), Expect = 0.034
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
LP VF+ P+R DL+ + N +Q Y + AG +T AES+G+G
Sbjct: 18 LPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSG 64
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 39.5 bits (88), Expect = 0.045
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
LP +F+ RPD++ +SM QP+ AG +T+AES+G+G
Sbjct: 19 LPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSG 65
>UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr13 scaffold_48, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 131
Score = 37.9 bits (84), Expect = 0.14
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -3
Query: 333 VGANIRPPRHMLPKAP*P 280
VGANI PPRHMLPKAP P
Sbjct: 107 VGANILPPRHMLPKAPWP 124
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 37.9 bits (84), Expect = 0.14
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
LP VF RPD++ +++ + RQPY + +G S E+WG G
Sbjct: 18 LPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPG 64
>UniRef50_Q9UFE2 Cluster: Putative uncharacterized protein
DKFZp434E026; n=1; Homo sapiens|Rep: Putative
uncharacterized protein DKFZp434E026 - Homo sapiens
(Human)
Length = 158
Score = 37.1 bits (82), Expect = 0.24
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -2
Query: 436 SLNERWDASSSNGCCQGRSPLSEVDATVPAPPGL 335
+L +W S+G C G SPLS A PAPPGL
Sbjct: 106 ALPGKWHLLLSSGLCGGNSPLSGNGAVCPAPPGL 139
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 36.7 bits (81), Expect = 0.31
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 66 DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKN 161
+G G++ +P VF +PIR D+VN VH ++KN
Sbjct: 12 NGNGASCAMPEVFLSPIRADIVNAVHTGLAKN 43
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 35.1 bits (77), Expect = 0.96
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +2
Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
G++++ + +PLVV+DK+QEINK
Sbjct: 6 GYVVDNVSEIPLVVSDKIQEINK 28
>UniRef50_UPI0000F212F9 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 194
Score = 33.9 bits (74), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 314 HHDTCYRRHPDRTYGYHHHGTRNSGN 237
HH + RH DR +G HHHG + G+
Sbjct: 132 HHTRHHTRHHDRHHGRHHHGRHHHGH 157
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 33.9 bits (74), Expect = 2.2
Identities = 22/84 (26%), Positives = 33/84 (39%)
Frame = +2
Query: 257 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQA 436
+GGG R G+ RGGR P K + H
Sbjct: 76 KGGGGRRRGEAGEVASIRGGRQAHPPKVQKVIHKKINKKEKKLALCSAIAATASKSTVAG 135
Query: 437 IGHIIEKIPGLPLVVADKVQEINK 508
GHII+ I LP+V++D ++ ++K
Sbjct: 136 RGHIIDGIE-LPIVISDDIESVSK 158
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 33.9 bits (74), Expect = 2.2
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 57 EE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
+E G + LP +F+ P+R DL+ +S QP AG +TSA S G G
Sbjct: 20 DERGGEKDSVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVG 77
>UniRef50_Q2S0X7 Cluster: Sensor protein; n=1; Salinibacter ruber
DSM 13855|Rep: Sensor protein - Salinibacter ruber
(strain DSM 13855)
Length = 942
Score = 33.5 bits (73), Expect = 2.9
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 342 GGAGTVASTSDSGERPWQQPLLLLASQRSFRL*DTLLKRFPGFPWL 479
GG GTV +T +G RP PL+LLAS + + +T+L + G+ W+
Sbjct: 146 GGGGTVLATL-TGPRPETSPLILLASMGTIAVVETVLTQ--GWLWI 188
>UniRef50_A3HV43 Cluster: Sensor protein; n=1; Algoriphagus sp.
PR1|Rep: Sensor protein - Algoriphagus sp. PR1
Length = 719
Score = 33.5 bits (73), Expect = 2.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 460 NLFNNVSYSLNERWDASSSNGCCQGRSPLSEVDATV 353
NLFNN Y+LNE+ +S+ N +G P V TV
Sbjct: 604 NLFNNAFYALNEKAKSSADNDSYKGYQPEVTVKTTV 639
>UniRef50_Q52PH1 Cluster: Golden2-like transcription factor; n=8;
Poaceae|Rep: Golden2-like transcription factor - Zea
mays (Maize)
Length = 469
Score = 33.5 bits (73), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 312 PRHMLPKAP*PDLWVPPPR 256
PRH+ P+AP P W PPP+
Sbjct: 325 PRHLAPRAPPPPPWAPPPQ 343
>UniRef50_UPI0000E23B66 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Pan troglodytes|Rep: PREDICTED:
hypothetical protein, partial - Pan troglodytes
Length = 366
Score = 31.9 bits (69), Expect = 8.9
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 179 REQGGWSPNQCRIMGYRTCCCPNSAFRGGGT-HRSGQGAFGNMCRGGRMFAPTKPWR 346
R QGG P + G + + RGGG RSG+G+ C G + P PWR
Sbjct: 244 RRQGGKKPQKAAAAGGQKALAAGAKSRGGGAKSRSGRGS--KRCGGQK---PLAPWR 295
>UniRef50_UPI00015A6D74 Cluster: Na(+)/H(+) exchange regulatory
cofactor NHE-RF2 (NHERF-2) (Tyrosine kinase activator
protein 1) (TKA-1) (SRY-interacting protein 1) (SIP- 1)
(Solute carrier family 9 isoform A3 regulatory factor 2)
(NHE3 kinase A regulatory protein E3KARP)
(Sodium-hydroge; n=2; Danio rerio|Rep: Na(+)/H(+)
exchange regulatory cofactor NHE-RF2 (NHERF-2) (Tyrosine
kinase activator protein 1) (TKA-1) (SRY-interacting
protein 1) (SIP- 1) (Solute carrier family 9 isoform A3
regulatory factor 2) (NHE3 kinase A regulatory protein
E3KARP) (Sodium-hydroge - Danio rerio
Length = 385
Score = 31.9 bits (69), Expect = 8.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 302 CYRRHPDRTYGYHHHGTRNSG 240
CY DR YG+H HG RN G
Sbjct: 10 CYLTKGDRGYGFHLHGERNRG 30
>UniRef50_Q4SGH5 Cluster: Chromosome undetermined SCAF14594, whole
genome shotgun sequence; n=2; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14594,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 732
Score = 31.9 bits (69), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 325 RPHEALAALAPSRQPPTAESGLGSSRCCYWRPSARSGYRT 444
+P E LA P PP+A + + C+W P G+RT
Sbjct: 427 QPVEGLADTLPPCWPPSAHAAFNLLQGCWWCPGILPGWRT 466
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,921,172
Number of Sequences: 1657284
Number of extensions: 10935806
Number of successful extensions: 36050
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 33995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35978
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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