Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1669X
         (515 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.1  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   2.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.7  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   4.9  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   4.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   6.5  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   6.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 275 YGYHHHGTRNSGNSTSG 225
           YGYH+H   NS   ++G
Sbjct: 62  YGYHNHQNYNSNVLSNG 78


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 275 YGYHHHGTRNSGNSTSG 225
           YGYH+H   NS   ++G
Sbjct: 62  YGYHNHQNYNSNVLSNG 78


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 275 YGYHHHGTRNSGNSTSG 225
           YGYH+H   NS   ++G
Sbjct: 62  YGYHNHQNYNSNVLSNG 78


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 275 YGYHHHGTRNSGNSTSG 225
           YGYH+H   NS   ++G
Sbjct: 62  YGYHNHQNYNSNVLSNG 78


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 177  CVSKEAGHQTSAESW 221
            C  K+ GH+ S  SW
Sbjct: 1152 CEEKKPGHKPSTSSW 1166


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
 Frame = +2

Query: 203 NQCRIMGYRTCCCPN--SAFRGG--GTHRSGQGAFGNMCRG-GRMFAPT---KPWRRWH 355
           +Q R  G  TC CPN   A R G  G H   +        G G+++  T   K   RWH
Sbjct: 281 SQRRYTGRATCDCPNCQEAERLGPAGVHLRKKNIHSCHIPGCGKVYGKTSHLKAHLRWH 339


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 110  AHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQCRIMGYR 229
            A TSG G+    FY+ E     + + G  S N   I  +R
Sbjct: 1376 AQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 110  AHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQCRIMGYR 229
            A TSG G+    FY+ E     + + G  S N   I  +R
Sbjct: 1376 AQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 92  PVRIQGAHTSGPGQ*CSRFYVQELEAAL 175
           PVRI G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 77  VSQAPPVRIQGAHTSGP 127
           +S  PP+ I GA  +GP
Sbjct: 304 ISGVPPLSIDGALEAGP 320


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -3

Query: 276 LWVPPPRNAEFGQQHVRYPMIRHWFGD 196
           LW+  P +       V Y  + HW+ D
Sbjct: 440 LWLGDPSSVLSHGHRVIYSTVGHWYLD 466


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 324 NIRPPRHMLPKAP*PDLWVPPPRNAE 247
           N R P+H + ++P      P PR+ E
Sbjct: 273 NFRVPQHQVLQSPSSTSSSPEPRSPE 298


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 514 VWLVDLLDFVGYNQGKPGNL 455
           +W VD+ DF+G    K G L
Sbjct: 351 IWTVDMDDFLGLCGPKNGLL 370


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -1

Query: 320 YVHHDTCYRRHPDRTYGYHHHGTRNSGN 237
           Y++H    + +      Y+H+G   SG+
Sbjct: 371 YINHQNYVQGYQGEHPNYNHYGYHYSGD 398


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -1

Query: 320 YVHHDTCYRRHPDRTYGYHHHGTRNSGN 237
           Y++H    + +      Y+H+G   SG+
Sbjct: 319 YINHQNYVQGYQGEHPNYNHYGYHYSGD 346


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,053
Number of Sequences: 336
Number of extensions: 2573
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)