Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1669X
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    89   3e-19
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    89   3e-19
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.7  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   3.8  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   5.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.7  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   6.7  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   8.9  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   8.9  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   8.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 89.4 bits (212), Expect = 3e-19
 Identities = 43/83 (51%), Positives = 46/83 (55%)
 Frame = +2

Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
           GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH                          A 
Sbjct: 81  GGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLAR 140

Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
           GH IE+IP +PLVV D VQ   K
Sbjct: 141 GHRIEEIPEVPLVVDDAVQSFQK 163



 Score = 89.0 bits (211), Expect = 4e-19
 Identities = 38/64 (59%), Positives = 49/64 (76%)
 Frame = +3

Query: 39  SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 218
           +V ++ ++   +     LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAES
Sbjct: 7   TVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAES 66

Query: 219 WGTG 230
           WGTG
Sbjct: 67  WGTG 70


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 89.4 bits (212), Expect = 3e-19
 Identities = 43/83 (51%), Positives = 46/83 (55%)
 Frame = +2

Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
           GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH                          A 
Sbjct: 81  GGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLAR 140

Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
           GH IE+IP +PLVV D VQ   K
Sbjct: 141 GHRIEEIPEVPLVVDDAVQSFQK 163



 Score = 88.2 bits (209), Expect = 6e-19
 Identities = 38/64 (59%), Positives = 49/64 (76%)
 Frame = +3

Query: 39  SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 218
           +V ++ ++   +     LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAES
Sbjct: 7   TVSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAES 66

Query: 219 WGTG 230
           WGTG
Sbjct: 67  WGTG 70


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 314 HHDTCYRRHPDRTYGYHHHGTRNSGNSTS 228
           HH   Y  H    +G+ HH   +S NS+S
Sbjct: 17  HHTHDYDHHNHDHHGHDHHSHDSSSNSSS 45


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 92  PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 187
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 367 PPTAESGLGSSRCCYWRPSARSGYRTHY 450
           PP+  SG   S C Y+ P    GY   Y
Sbjct: 428 PPSPSSGRSCSNCNYYYPYTPVGYYPVY 455


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 315  PPRHMLPKAP*PDLWVPPPRNA 250
            PP+   P  P P + VPPP +A
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSA 1720


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 74  CTVSLFSEYTDTKGRATDRLISLL 3
           C V ++SEYT   G ++  L++L+
Sbjct: 492 CVVKIWSEYTKNTGESSPVLVALV 515


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 227 RTCCCPNSAFRGGGTHRSGQGAFGNMCRGG 316
           R C    S  R GG  R G+G FG   RGG
Sbjct: 434 RPCRLDFSTPRTGGGSRGGRGGFGG--RGG 461


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = -2

Query: 493 DFVGYNQGKPGNLF-NNVSYSLNERWDASSSNGCCQGR--SPLSEV---DATVP 350
           DFVGY QG   + F    SY++    D  +++G   G    P +E+   +A VP
Sbjct: 151 DFVGYEQGNSSSKFVQFTSYAIPATNDVCNASGIPLGMIVQPFAELRPDEAPVP 204


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 281 RTYGYHHHGTRNSG 240
           R + +HHH  +NSG
Sbjct: 298 RKFNFHHHSRKNSG 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,862
Number of Sequences: 5004
Number of extensions: 38108
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)