Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1669X
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 93 1e-19
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 93 1e-19
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.10
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 29 2.2
03_05_0452 + 24464134-24464442 29 2.9
10_08_0798 + 20649370-20649428,20649515-20649719 28 3.9
10_07_0029 + 12031711-12032464,12044289-12044386 28 3.9
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 28 5.1
11_02_0111 + 8396304-8396378,8396697-8397113,8397220-8397483,839... 28 5.1
07_01_0469 - 3552409-3553368 28 5.1
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563... 28 5.1
04_01_0244 - 3194141-3195091,3195301-3195312 28 5.1
04_01_0235 + 2985524-2985835 28 5.1
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307... 27 6.8
05_03_0331 + 12488005-12488454,12488561-12489505 27 8.9
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 27 8.9
01_05_0327 + 20984336-20985478 27 8.9
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 93.1 bits (221), Expect = 1e-19
Identities = 42/83 (50%), Positives = 48/83 (57%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH A
Sbjct: 85 GGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLAR 144
Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
GH IE +P LPLV++D + I K
Sbjct: 145 GHRIETVPELPLVISDSAESIEK 167
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/51 (64%), Positives = 39/51 (76%)
Frame = +3
Query: 78 SAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
S+ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTG
Sbjct: 24 SSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTG 74
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 93.1 bits (221), Expect = 1e-19
Identities = 43/83 (51%), Positives = 48/83 (57%)
Frame = +2
Query: 260 GGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAI 439
GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH A
Sbjct: 84 GGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLAR 143
Query: 440 GHIIEKIPGLPLVVADKVQEINK 508
GH IE +P PLVV+D ++ I K
Sbjct: 144 GHRIEGVPEFPLVVSDSIESIEK 166
Score = 70.9 bits (166), Expect = 6e-13
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +3
Query: 90 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 230
+P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTG
Sbjct: 27 MPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTG 73
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.10
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 315 PPRHMLPKAP*PDLWVPPP 259
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 454 FNNVSYSLNERWDASSSNGCCQGR 383
++++SYSLN S+S+ CCQGR
Sbjct: 617 YSHLSYSLNIHHCFSNSHFCCQGR 640
>03_05_0452 + 24464134-24464442
Length = 102
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 152 VQELEAALLREQGGWSPNQCRIMGYRTCCCPNSA 253
V+++ ++LLR G Q ++G R C C NSA
Sbjct: 21 VEKVRSSLLRVLGLLRGGQASMLGKRACFCSNSA 54
>10_08_0798 + 20649370-20649428,20649515-20649719
Length = 87
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 233 CCCPNSAFRGGGTHRS---GQGAFGNMCRGGRMFAPT 334
C C +SA GGG H + G N CR GR PT
Sbjct: 19 CRCASSARSGGGDHTTCSCGDHCGCNPCRCGRESQPT 55
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 320 YVHHDTCYRRHPDRTYG 270
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRYHPRRANG 110
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 66 DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 218
D SA+ K ++ D N++ + SK R VSK H SAES
Sbjct: 67 DSFVSAEETTIGNKRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_02_0111 +
8396304-8396378,8396697-8397113,8397220-8397483,
8398237-8398608
Length = 375
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -2
Query: 466 PGNLFNNVSYSLNERWDASSSNGC-CQGRSPLSEVDATVP 350
PGN FN++ SL E+++ S+ + C C+G P + A +P
Sbjct: 99 PGNDFNHIFQSL-EQFEQSTIHDCACKGLQPPAHFVAGLP 137
>07_01_0469 - 3552409-3553368
Length = 319
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 320 YVHHDTCYRRHPDRTYG 270
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRFHPRRASG 110
>05_05_0285 -
23855219-23855371,23855391-23856063,23856239-23856301,
23856478-23856604,23856751-23856897,23856968-23856974,
23857203-23857379
Length = 448
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 340 LAALAPSRQPPTAESGLGSSRCCYWRPSARS 432
+A AP AESG+G+ C +WR S S
Sbjct: 306 IAKDAPPAVEVKAESGVGTLGCAFWRTSLGS 336
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 320 YVHHDTCYRRHPDRTYG 270
Y+ HDT YR HP R G
Sbjct: 98 YIFHDTAYRFHPRRANG 114
>04_01_0235 + 2985524-2985835
Length = 103
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/71 (26%), Positives = 25/71 (35%)
Frame = +2
Query: 137 CSRFYVQELEAALLREQGGWSPNQCRIMGYRTCCCPNSAFRGGGTHRSGQGAFGNMCRGG 316
C R Q + AA +++ W N G T C P GG G CR
Sbjct: 8 CGRRPGQTVVAAAPQQKEQWQHNLGNTGGAPTLCIPLPCLSGGEEAGGGSSREEAACRWQ 67
Query: 317 RMFAPTKPWRR 349
+ T+P R
Sbjct: 68 LLECATRPTNR 78
>11_06_0176 +
20929629-20929791,20929918-20930333,20930449-20930736,
20931034-20931147,20931245-20931352,20931701-20931744,
20933106-20933200,20934103-20934182,20934278-20934391,
20934476-20934628,20934740-20934832
Length = 555
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 312 PRHMLPKAP*PDLWVPPPRNAEFGQQHVRY 223
P+ ++PK P L+ PPP QQ RY
Sbjct: 422 PKILVPKISDPSLYKPPPDPRIVNQQATRY 451
>05_03_0331 + 12488005-12488454,12488561-12489505
Length = 464
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 24 GSPTFSVGVFREE*DGAGSAKPLPFVFK 107
G+PT + V R E + AKP P+ FK
Sbjct: 3 GAPTLAFSVRRRERELVAPAKPTPYEFK 30
>05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -1
Query: 173 GLPRVLGHRNVNIIDQVRTYGRLEYEREGLG*PCTVSLFSEYTDTKGRATD 21
G P LG N N+ V + GR E REGL PC+V + + + R D
Sbjct: 1337 GRPSSLGLSNGNL--GVLSTGRREEAREGLFRPCSVKTSAGNEEQQKRPGD 1385
>01_05_0327 + 20984336-20985478
Length = 380
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -1
Query: 281 RTYGYHH-HGTRNSGNST 231
RT G HH HG +NSG ST
Sbjct: 251 RTGGMHHGHGAQNSGGST 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,068,606
Number of Sequences: 37544
Number of extensions: 340875
Number of successful extensions: 1283
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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