Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1669X
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    91   3e-19
Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical pr...    30   0.85 
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 42/84 (50%), Positives = 50/84 (59%)
 Frame = +2

Query: 257 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQA 436
           RGGGTHRSGQGAFGNMCRGG MFAP K +RRWH                         QA
Sbjct: 79  RGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQA 138

Query: 437 IGHIIEKIPGLPLVVADKVQEINK 508
            GH+I+++  +PLVV+DKV+   K
Sbjct: 139 RGHVIDQVAEVPLVVSDKVESFRK 162



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 30/63 (47%), Positives = 41/63 (65%)
 Frame = +3

Query: 42  VGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 221
           V V+ E+ +   S   LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESW
Sbjct: 7   VTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66

Query: 222 GTG 230
           GTG
Sbjct: 67  GTG 69



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 28 ARPLVSVYSEKSETVQGQ 81
          ARPLV+VY EK E  Q Q
Sbjct: 3  ARPLVTVYDEKYEATQSQ 20


>Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical
           protein T19B10.4a protein.
          Length = 243

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 242 PNSAFRGGGTHRSGQGAFGNMCRGGRMFAPTKP 340
           P S + G   +  GQGA GN   G + FA  +P
Sbjct: 116 PPSGYNGPSANNVGQGAIGNNMNGAQPFAGPEP 148


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 300 LPKAP*PDLWVPPPRNAEFGQQHVRYPM 217
           +P+ P    W PPP++ EF  +H+  P+
Sbjct: 739 IPEKP-KRTWQPPPKSEEFLDEHIDKPL 765


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,506,925
Number of Sequences: 27780
Number of extensions: 238723
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)