Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1668
(697 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 125 9e-28
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 113 4e-24
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 106 6e-22
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 97 3e-19
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 94 3e-18
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 92 1e-17
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 91 3e-17
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 90 4e-17
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 90 4e-17
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 87 4e-16
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 87 5e-16
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 87 5e-16
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 87 5e-16
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 84 4e-15
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 82 1e-14
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 77 5e-13
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 75 1e-12
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 73 5e-12
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 67 3e-10
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 63 7e-09
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 61 3e-08
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 60 4e-08
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 54 3e-06
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 54 4e-06
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 53 8e-06
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 51 2e-05
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 51 2e-05
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 50 5e-05
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 48 2e-04
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 48 2e-04
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 48 3e-04
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 43 0.008
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 42 0.014
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 42 0.019
UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole gen... 38 0.24
UniRef50_Q9UFE2 Cluster: Putative uncharacterized protein DKFZp4... 37 0.41
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 36 0.95
UniRef50_Q5NB71 Cluster: Putative uncharacterized protein P0431F... 36 1.3
UniRef50_Q4BUU0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_A6NR78 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_Q52PH1 Cluster: Golden2-like transcription factor; n=8;... 33 5.1
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 33 5.1
UniRef50_UPI0000E23B66 Cluster: PREDICTED: hypothetical protein,... 33 6.7
UniRef50_UPI00015B4B32 Cluster: PREDICTED: hypothetical protein;... 33 8.8
UniRef50_UPI0000F212F9 Cluster: PREDICTED: hypothetical protein;... 33 8.8
UniRef50_Q2S0X7 Cluster: Sensor protein; n=1; Salinibacter ruber... 33 8.8
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 125 bits (302), Expect = 9e-28
Identities = 59/72 (81%), Positives = 65/72 (90%)
Frame = +3
Query: 480 SRASLGCSRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 659
S L S ++QEINKTKQAVIFLRR+KAWSD+LKVYKSQRLRAGKGKMRNRRR+ RKGP
Sbjct: 13 SEIPLVVSDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRLHRKGP 72
Query: 660 LIIFNKDQGLTR 695
LII+NKDQGLTR
Sbjct: 73 LIIYNKDQGLTR 84
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 113 bits (272), Expect = 4e-24
Identities = 53/90 (58%), Positives = 57/90 (63%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVADK 510
++GH IE++PELPLVV DK
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDK 157
Score = 95.1 bits (226), Expect = 1e-18
Identities = 41/63 (65%), Positives = 54/63 (85%)
Frame = +3
Query: 507 QVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 686
+V+ KTK+AV+ L++LKAW+DI KVY SQR+RAGKGKMRNRRRIQR+GP II+N+D G
Sbjct: 157 KVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG 216
Query: 687 LTR 695
+ +
Sbjct: 217 IIK 219
Score = 91.1 bits (216), Expect = 2e-17
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = +2
Query: 62 VGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 241
+ V+ E+ + +G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AGHQTSAESW
Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67
Query: 242 GTGRVL 259
GTGR +
Sbjct: 68 GTGRAV 73
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 106 bits (254), Expect = 6e-22
Identities = 49/93 (52%), Positives = 59/93 (63%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH
Sbjct: 71 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSA 130
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVADKSRR 519
Q++GH+I+ + E PLVV+D+ ++
Sbjct: 131 IAASGVPALVQSKGHVIDGVSEFPLVVSDEVQK 163
Score = 101 bits (242), Expect = 2e-20
Identities = 46/72 (63%), Positives = 59/72 (81%)
Frame = +3
Query: 480 SRASLGCSRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 659
S L S +VQ++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+GP
Sbjct: 151 SEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGP 210
Query: 660 LIIFNKDQGLTR 695
L++++KD+GL +
Sbjct: 211 LVVYDKDEGLRK 222
Score = 81.8 bits (193), Expect = 1e-14
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = +2
Query: 38 SIGSPTFSVGVFREE*DGAGSAKP-LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 214
S+G+ V V+ E+ + A LP VFKAPIRPD+VN+VH + +N+RQ Y VS+ A
Sbjct: 2 SLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELA 61
Query: 215 GHQTSAESWGTGRVL 259
GHQTSAESWGTGR +
Sbjct: 62 GHQTSAESWGTGRAV 76
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 97.5 bits (232), Expect = 3e-19
Identities = 44/88 (50%), Positives = 51/88 (57%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 44 GTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATASA 103
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVA 504
ARGH + +PE+PLV++
Sbjct: 104 LAASGSPALLMARGHNVSTVPEVPLVIS 131
Score = 60.5 bits (140), Expect = 4e-08
Identities = 28/55 (50%), Positives = 38/55 (69%)
Frame = +3
Query: 519 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 683
I KT AV L+ + A +D K S++LRAGKGK+R RR QR+GPL+I+N D+
Sbjct: 140 IRKTSAAVALLKAVGAGADCEKAKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDE 194
Score = 38.3 bits (85), Expect = 0.18
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 176 KNSRQPYCVSKEAGHQTSAESWGTGRVL 259
++++ V +AGHQTSAESWGTGR +
Sbjct: 22 ESTKDTLTVPNKAGHQTSAESWGTGRAV 49
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 93.9 bits (223), Expect = 3e-18
Identities = 44/87 (50%), Positives = 50/87 (57%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPRV GGGTHR+GQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 67 GTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLGQKRFATVSA 126
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVV 501
ARGH I ++ E+PLV+
Sbjct: 127 LAASGVPALLFARGHQISEVAEVPLVI 153
Score = 88.2 bits (209), Expect = 2e-16
Identities = 39/67 (58%), Positives = 48/67 (71%)
Frame = +2
Query: 59 SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 238
+V V + G+ PLP VF +PIRPD+V VH M+KN RQPY VS++AGHQTSAES
Sbjct: 6 TVSVLSADGTATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQTSAES 65
Query: 239 WGTGRVL 259
WGTGR +
Sbjct: 66 WGTGRAV 72
Score = 52.8 bits (121), Expect = 8e-06
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = +3
Query: 516 EINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 674
+I +T A L+ + A D+ KV S++LRAGKGK+R RR QR+GPL++++
Sbjct: 162 KIARTAAAAGLLKTVGALKDVEKVKDSRKLRAGKGKLRGRRHRQRRGPLVVYD 214
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 92.3 bits (219), Expect = 1e-17
Identities = 45/89 (50%), Positives = 50/89 (56%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPR+ GGGT SG GAFGNMCRGGRMFAPTK +RRWH
Sbjct: 67 GTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSA 126
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVAD 507
+RGH I +PE+PLVV D
Sbjct: 127 LAASSVPSLVMSRGHQIGNVPEVPLVVED 155
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/67 (50%), Positives = 42/67 (62%)
Frame = +2
Query: 59 SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 238
SV V+ D PLP VF APIR D+V VH +M+KNSRQ Y V++ +G SA S
Sbjct: 6 SVSVYSASSDSVVGTCPLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65
Query: 239 WGTGRVL 259
WGTGR +
Sbjct: 66 WGTGRAV 72
Score = 61.3 bits (142), Expect = 2e-08
Identities = 25/59 (42%), Positives = 42/59 (71%)
Frame = +3
Query: 510 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 686
+Q KTK+A+ FL+ + A D+ +V S+ +RAG+GKMRNRR + R+GP+++ ++G
Sbjct: 157 IQGYEKTKEAMAFLKAIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNKG 215
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 90.6 bits (215), Expect = 3e-17
Identities = 44/90 (48%), Positives = 48/90 (53%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPRV G GTHRSGQ AFGN CR GRM P K WRRWH
Sbjct: 69 GTGRAVARIPRVSGSGTHRSGQAAFGNQCRKGRMSLPIKVWRRWHRRVNIKQKRHAAATA 128
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVADK 510
ARGH I ++P++PLVV DK
Sbjct: 129 VAATGIVPLVLARGHRISQVPQIPLVVEDK 158
Score = 70.5 bits (165), Expect = 4e-11
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Frame = +2
Query: 62 VGVFREE*DGAGSAK--PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 235
V VF + +AK PLP VF+ PIRPD+V+ VH +++KN RQ + V+ +AG Q SAE
Sbjct: 7 VSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHSAE 66
Query: 236 SWGTGRVL 259
SWGTGR +
Sbjct: 67 SWGTGRAV 74
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 507 QVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQ 683
+++ KT A+ FL+R A+ D+ KV ++ +RAG K R ++ RKGPL++ FN++
Sbjct: 158 KIESYEKTTDALNFLKRFGAFEDVQKVVSTKVVRAGISKQRGKKYRVRKGPLVVYFNENA 217
Query: 684 GLTR 695
L +
Sbjct: 218 KLLK 221
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 90.2 bits (214), Expect = 4e-17
Identities = 43/115 (37%), Positives = 57/115 (49%)
Frame = +1
Query: 184 EAALLREQGGWSPNQCRIMGYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 363
+A + G+ + R G ++R PRV+GGGTHRSGQ A+ N CR G MFAPT+ W
Sbjct: 49 QAYAISRMSGYQTS-ARSWGTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTRTW 107
Query: 364 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKSRRSTR 528
R WH +RGH +E +PELPLV+ D T+
Sbjct: 108 RHWHRKINLKEKRLALAVSVAATASVPLVMSRGHRVESVPELPLVLDDTMETLTK 162
Score = 70.5 bits (165), Expect = 4e-11
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
+P VF P+R DLV+ VH +MSKN RQ Y +S+ +G+QTSA SWGTGR L
Sbjct: 23 MPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQTSARSWGTGRAL 72
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 90.2 bits (214), Expect = 4e-17
Identities = 39/45 (86%), Positives = 40/45 (88%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 375
G VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH
Sbjct: 185 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWH 229
Score = 82.6 bits (195), Expect = 8e-15
Identities = 37/65 (56%), Positives = 48/65 (73%)
Frame = +2
Query: 65 GVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 244
GV+ ++ + + LP VF+AP+RPD+V+ VH + KN RQPY VS EAGHQTSAESWG
Sbjct: 126 GVYNDKSEPTDTQIRLPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWG 185
Query: 245 TGRVL 259
TGR +
Sbjct: 186 TGRAV 190
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 87.0 bits (206), Expect = 4e-16
Identities = 38/63 (60%), Positives = 51/63 (80%)
Frame = +3
Query: 507 QVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 686
+V+ KTK+ V+ L++LKAW+DI KVY SQR+RAGKGKMRNRR IQR+G II+N+D G
Sbjct: 98 KVEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRPIQRRGSCIIYNEDNG 157
Query: 687 LTR 695
+ +
Sbjct: 158 IIK 160
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = +2
Query: 143 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 253
D+VN VH ++ KN QPY VS+ AG+QTSAESWGTGR
Sbjct: 25 DVVNFVHSNLHKNDSQPYAVSESAGYQTSAESWGTGR 61
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 86.6 bits (205), Expect = 5e-16
Identities = 43/89 (48%), Positives = 48/89 (53%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPRV GGGTHR+GQ AFGNMCRGG MF PTK WRRW
Sbjct: 68 GTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKINLKEKRYAVCSS 127
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVAD 507
ARGH I + E+PLV ++
Sbjct: 128 IAASGITSLVLARGHRISNLKEVPLVASN 156
Score = 64.9 bits (151), Expect = 2e-09
Identities = 28/50 (56%), Positives = 36/50 (72%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
+P VF+ PIR DL+ + +MSKN R PY V AG++TSAESWGTGR +
Sbjct: 24 IPVVFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAGYETSAESWGTGRAV 73
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = +3
Query: 492 LGCSRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF 671
L S ++ + KTK A+ FL L ++ ++ KS +LRA GKMRNR+ GPLII+
Sbjct: 152 LVASNDIESMQKTKDALKFLISLGLRDEVNRLIKSXKLRARXGKMRNRKYKISNGPLIIY 211
Query: 672 NKDQGLTR 695
+ D G+ +
Sbjct: 212 SXDSGIKK 219
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 86.6 bits (205), Expect = 5e-16
Identities = 41/108 (37%), Positives = 57/108 (52%)
Frame = +1
Query: 184 EAALLREQGGWSPNQCRIMGYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 363
+A + + G+ + R G +AR+PRV+GGGTHR+GQ A+ N CR G M+APT+ W
Sbjct: 49 QAYAVSKMSGYQTS-ARSWGTGRAMARVPRVKGGGTHRAGQAAYANFCRAGGMYAPTRVW 107
Query: 364 RRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 507
RRWH +RGH IE + E+P+VV D
Sbjct: 108 RRWHRKVNLKEKRQALASALAATAVVPVVMSRGHRIEALREVPMVVDD 155
Score = 71.3 bits (167), Expect = 2e-11
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
+P VF AP+R DLV VH +MSKN RQ Y VSK +G+QTSA SWGTGR +
Sbjct: 23 MPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTSARSWGTGRAM 72
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 86.6 bits (205), Expect = 5e-16
Identities = 42/90 (46%), Positives = 50/90 (55%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPRV GT RSGQGAFGNMCRGG MF+P K +RR+H
Sbjct: 69 GTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVAAA 128
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVADK 510
ARGH I +PELPLV++++
Sbjct: 129 IAATGCPSLVMARGHRINNVPELPLVISNE 158
Score = 72.1 bits (169), Expect = 1e-11
Identities = 35/56 (62%), Positives = 41/56 (73%)
Frame = +2
Query: 92 AGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
A S+ PLP VF +P+R DLV V +MSKN RQ Y VS +AGHQ SAESWGTGR +
Sbjct: 19 ATSSIPLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAGHQHSAESWGTGRAV 74
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 501 SRQVQEINKTKQAVIFLRRL-KAWSDILK-VYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 674
S ++Q INKT AV F + K + +K + S +R GKGKMRNRRR+ GPL+++
Sbjct: 156 SNEIQNINKTSTAVEFFKNFGKGLEEEMKRIESSIAIRCGKGKMRNRRRVCAVGPLVVYA 215
Query: 675 KDQGLTR 695
+D G+ +
Sbjct: 216 EDNGIVK 222
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 83.8 bits (198), Expect = 4e-15
Identities = 39/89 (43%), Positives = 47/89 (52%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VAR+PR+ G GT R+GQ AF N RGG M++P K WRRWH
Sbjct: 68 GTGRAVARVPRISGSGTSRNGQAAFANSARGGHMYSPLKVWRRWHRMVNVTQRRFAMCSA 127
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVAD 507
ARGH I+ +PELPLVV+D
Sbjct: 128 IAASSNPSLVLARGHKIDNVPELPLVVSD 156
Score = 61.3 bits (142), Expect = 2e-08
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Frame = +2
Query: 86 DG-AGSAKPLPFVFK-APIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
DG A +P V + +PIRPD+V+ VH++++KN RQP+ AGHQ SAESWGTGR +
Sbjct: 14 DGKARDTTAVPSVIRYSPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSAESWGTGRAV 73
Score = 61.3 bits (142), Expect = 2e-08
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +3
Query: 501 SRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 680
S V++I KTK+AV L LKA D+ +S+R+R G GK RNRR QR+G LI+ +++
Sbjct: 155 SDDVEQIKKTKEAVKVLAALKASDDVKHSAESKRIRVGSGKARNRRYTQRRGVLIVHDQN 214
Query: 681 QGL 689
+GL
Sbjct: 215 EGL 217
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 82.2 bits (194), Expect = 1e-14
Identities = 37/89 (41%), Positives = 47/89 (52%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G V+R+PRV G GTHRSGQGA N CRGGR+F PT WR+WH
Sbjct: 63 GTGRAVSRVPRVPGSGTHRSGQGAIANFCRGGRIFNPTTIWRKWHHKINKNQRKSAIFSA 122
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVAD 507
+RG+ ++ IPE+P V+ D
Sbjct: 123 IASSSIVSIIVSRGYRVKTIPEIPFVIED 151
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/50 (56%), Positives = 33/50 (66%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
+P VF + IR D+V VH +M KN RQ Y VS AG TSA SWGTGR +
Sbjct: 19 IPKVFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWGTGRAV 68
Score = 40.7 bits (91), Expect = 0.033
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +3
Query: 510 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 680
+++I KT+ + L L + I++ ++L++GKGKMRNRR + GPL++F +
Sbjct: 153 IEKIPKTRDLIKILTTLGI-NSIVRNKLKRKLKSGKGKMRNRRFKKPTGPLLVFKNN 208
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 76.6 bits (180), Expect = 5e-13
Identities = 37/89 (41%), Positives = 46/89 (51%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G +AR+PRV+GGGT R+GQGAF N CR GRM PTK RRW
Sbjct: 65 GTGRAIARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAMA 124
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVAD 507
+ARGH I + LP++V+D
Sbjct: 125 VAASAQASLVEARGHRISDVKMLPIIVSD 153
Score = 60.1 bits (139), Expect = 5e-08
Identities = 29/50 (58%), Positives = 32/50 (64%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
LP VF PIR DLV + +RQPY VSK AG Q SAESWGTGR +
Sbjct: 21 LPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAESWGTGRAI 70
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +3
Query: 501 SRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 668
S + + KTK AV LR L ++ +V KS+ +R GKGKMRNRR QRKG LI+
Sbjct: 152 SDDIAKARKTKDAVEILRNLNMTEELKRVEKSRGVRCGKGKMRNRRYTQRKGILIV 207
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/91 (41%), Positives = 47/91 (51%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPR+ G G+ R+GQGAFGNM R G MF+P K +R+W
Sbjct: 68 GTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASC 127
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVADKS 513
ARGH I +P++PLVV KS
Sbjct: 128 IAASAVPALVSARGHHIAGVPQIPLVVNSKS 158
Score = 70.5 bits (165), Expect = 4e-11
Identities = 30/60 (50%), Positives = 45/60 (75%)
Frame = +3
Query: 501 SRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 680
S+ + I KTKQAV L+++ A+SD+LKV S+ +RAG+GKMR R+ +RKGPL+++ D
Sbjct: 156 SKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKERKGPLVVYGND 215
Score = 60.1 bits (139), Expect = 5e-08
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
LP VF APIR D+V+ V+ + SKN+RQP VS +AG Q SA SWGTGR +
Sbjct: 24 LPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQHSAISWGTGRAV 73
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 73.3 bits (172), Expect = 5e-12
Identities = 32/59 (54%), Positives = 48/59 (81%)
Frame = +3
Query: 519 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTR 695
I KT +AV L++L A++DI KV S+ +R+GKGKMRNRR +QR+GPL+++++D G+TR
Sbjct: 164 IKKTAKAVELLKQLGAYADIEKVKASRNVRSGKGKMRNRRYVQRRGPLVVYSEDNGVTR 222
Score = 36.7 bits (81), Expect = 0.54
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 86 DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKN 181
+G G++ +P VF +PIR D+VN VH ++KN
Sbjct: 12 NGNGASCAMPEVFLSPIRADIVNAVHTGLAKN 43
Score = 35.9 bits (79), Expect = 0.95
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +1
Query: 361 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKS 513
WRRWH ARGH +E +PE+PLVV D +
Sbjct: 111 WRRWHRRVNIKEKRYAVCSAIAASAVPSLLLARGHRVEGVPEVPLVVDDSA 161
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 67.3 bits (157), Expect = 3e-10
Identities = 31/83 (37%), Positives = 42/83 (50%)
Frame = +1
Query: 259 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 438
A +PRV G G++R+GQGA+ N CRGG F P RRW
Sbjct: 71 ACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIASAIAATAV 130
Query: 439 XXXXQARGHIIEKIPELPLVVAD 507
QARGH++ ++ E+P+VV D
Sbjct: 131 VPLVQARGHVLGEVKEVPIVVVD 153
Score = 56.8 bits (131), Expect = 5e-07
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = +2
Query: 59 SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 238
+V V +E A + + LP VF PIR ++V +V+V+++KN++QP+ AG + SA S
Sbjct: 5 TVNVLTQEGQKASTIE-LPKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAIS 63
Query: 239 WGTGR 253
WGTGR
Sbjct: 64 WGTGR 68
Score = 53.6 bits (123), Expect = 4e-06
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = +3
Query: 510 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 689
VQEI +T+ AV L+++ + D+ +V R+ KGK R +KGPL+I+N+D+G+
Sbjct: 155 VQEIKRTRDAVELLKKVGVYGDVQRVLDGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGI 214
Query: 690 TR 695
+
Sbjct: 215 VK 216
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 62.9 bits (146), Expect = 7e-09
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = +3
Query: 507 QVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 632
+V+ KT++AV+ L++LKAW+DI KVY SQR+RAGKGKMRN
Sbjct: 20 KVEGYKKTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRN 61
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 60.9 bits (141), Expect = 3e-08
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +2
Query: 107 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
P P VF P+RPD++N VH + K R PY VS+ AG Q +A SWG GR +
Sbjct: 19 PRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTAHSWGPGRAV 69
Score = 56.8 bits (131), Expect = 5e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +3
Query: 519 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 680
+ KTK A+ ++ + D+ + S+ +RAG+GKMRNRR I RKGPL+I+N +
Sbjct: 149 VTKTKDALAIIKAVGVLRDVERCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTE 202
Score = 46.0 bits (104), Expect = 9e-04
Identities = 29/82 (35%), Positives = 34/82 (41%)
Frame = +1
Query: 256 VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXX 435
VAR+PR GG GA+ N RGG M PT RRW
Sbjct: 69 VARLPRKHGG------IGAYANFARGGHMAHPTTVIRRWCRKVNLNQRRYAVASALAASA 122
Query: 436 XXXXXQARGHIIEKIPELPLVV 501
+ARGH I +P +PLVV
Sbjct: 123 NAALVEARGHRIADVPSIPLVV 144
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 60.5 bits (140), Expect = 4e-08
Identities = 27/95 (28%), Positives = 45/95 (47%)
Frame = +1
Query: 256 VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXX 435
+ARIPR++G GT ++GQGA NMCRGGR+F ++W+
Sbjct: 74 LARIPRIKGSGTRKAGQGALANMCRGGRLFGNRNYSKKWNIKTNRKVKVSAFKTALLSTL 133
Query: 436 XXXXXQARGHIIEKIPELPLVVADKSRRSTRPNRL 540
+RGH ++ + P+++ + P+ L
Sbjct: 134 FETLVVSRGHSLKDVKNFPMIIDSILKYIWHPSEL 168
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 54.0 bits (124), Expect = 3e-06
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +3
Query: 513 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 680
+ + KT A+ L++ A+ D K S + GKGKMRNRR I RKGPLI++ +
Sbjct: 22 ESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRNRRYISRKGPLIVYGME 77
Score = 33.5 bits (73), Expect = 5.1
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 454 ARGHIIEKIPELPLVVADKS 513
ARGH IE +PELPLV+ D +
Sbjct: 2 ARGHRIESVPELPLVIGDSA 21
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 53.6 bits (123), Expect = 4e-06
Identities = 20/61 (32%), Positives = 41/61 (67%)
Frame = +3
Query: 507 QVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 686
+++ +NK ++ F + + W+D+ + ++R+RAGKGK R RR ++ K LI+ ++D+G
Sbjct: 151 ELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEG 210
Query: 687 L 689
+
Sbjct: 211 I 211
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 250
LP F+ P+R DL+ ++ N RQPY AG +TSAESWG G
Sbjct: 18 LPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAESWGAG 64
Score = 37.9 bits (84), Expect = 0.24
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 VARIPRVRGGGTHRSGQGAFGNMCRGG-RMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXX 432
VA +PRV+G +G+ A GG + APT P + W
Sbjct: 67 VAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPT-PEKDWTQRVNRKERRAALRSALAAT 125
Query: 433 XXXXXXQARGHIIEKIPELPLVVADK 510
+ RGH+I+ +P LP+VV D+
Sbjct: 126 AKPEFVKERGHVIDDVPHLPVVVVDE 151
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 52.8 bits (121), Expect = 8e-06
Identities = 20/65 (30%), Positives = 40/65 (61%)
Frame = +3
Query: 501 SRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 680
S +++ + +TK R + ++D+ + + +R RAG+GKMR RR +++K L++ KD
Sbjct: 142 SNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKD 201
Query: 681 QGLTR 695
G+ +
Sbjct: 202 DGVVK 206
Score = 37.9 bits (84), Expect = 0.24
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 250
LP VF RPD++ +++ + RQPY + +G S E+WG G
Sbjct: 18 LPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPG 64
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 51.2 bits (117), Expect = 2e-05
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 507 QVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKDQ 683
+++ KTK A+ FL+R A+ D+ KV ++ +RAG K R ++ RKGPL++ FN++
Sbjct: 4 KIESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGPLVVYFNENA 63
Query: 684 GLTR 695
L +
Sbjct: 64 KLLK 67
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 51.2 bits (117), Expect = 2e-05
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Frame = +1
Query: 205 QGGWSPNQCRIMGYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 384
+G + C G +ARIPR +G R G F RGGR P K ++ H
Sbjct: 76 EGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEI 132
Query: 385 XXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV---ADKSRRSTRPNRLSSS*G 555
ARGH++EK+P LP+VV A+K R+ +L + G
Sbjct: 133 NKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALG 192
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +3
Query: 513 QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 668
++IN+ K+A L W D+ + + ++RAGKGKMR RR + K L++
Sbjct: 176 EKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVV 227
Score = 37.5 bits (83), Expect = 0.31
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 86 DGAGSAK-PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTG 250
DGA A P F PIRPDL+ ++S QP V + AG + S ES+G G
Sbjct: 35 DGAYVADIEAPLHFLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVG 90
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 50.0 bits (114), Expect = 5e-05
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +3
Query: 510 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 668
V+ INKTK A+ L+ L + DI + + + +RAG+GKMR RR Q K LI+
Sbjct: 149 VEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIV 201
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = +3
Query: 510 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 674
++++ KTK+ L +L ++ +VY+ +R RAGKGK R R I+RKGPLI+ N
Sbjct: 159 LEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVN 212
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 48.0 bits (109), Expect = 2e-04
Identities = 18/62 (29%), Positives = 38/62 (61%)
Frame = +3
Query: 507 QVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 686
+++ + TK+ + L DI++ K +++++GKGK+R R+ KGPL++ D+G
Sbjct: 147 EIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVVVGNDRG 206
Query: 687 LT 692
++
Sbjct: 207 IS 208
Score = 41.5 bits (93), Expect = 0.019
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 253
LP +F+ RPD++ +SM QP+ AG +T+AES+G+GR
Sbjct: 19 LPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAESFGSGR 66
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 47.6 bits (108), Expect = 3e-04
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 459 RTHY*KDS-RASLGCSRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 635
R H KDS R + + + + T + FL+++ + D+ +V + R+RAGKGKMR R
Sbjct: 136 RGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGR 195
Query: 636 RRIQRKGPLII 668
+ + GPLII
Sbjct: 196 KYKEPIGPLII 206
Score = 40.3 bits (90), Expect = 0.044
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 244
LP +F P+R DL+ V ++ +S QP AG +TSAES+G
Sbjct: 25 LPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFG 69
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 42.7 bits (96), Expect = 0.008
Identities = 21/44 (47%), Positives = 23/44 (52%)
Frame = +3
Query: 258 CPNSACPWWWYP*VRSGCLR*HVSWWTYVRPHEALAALAPSRQP 389
C SA W VR C+R HV WW +VR E L LAP QP
Sbjct: 125 CAYSAHQRRWNEHVRRRCVRQHVPWWPHVRADEDLPPLAPQDQP 168
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 41.9 bits (94), Expect = 0.014
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 253
LP VF+ P+R DL+ + N +Q Y + AG +T AES+G+GR
Sbjct: 18 LPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGR 65
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 41.5 bits (93), Expect = 0.019
Identities = 27/83 (32%), Positives = 35/83 (42%)
Frame = +1
Query: 259 ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXX 438
ARI R++GGG R G+ RGGR P K + H
Sbjct: 70 ARIARMKGGGGRRRGEAGEVASIRGGRQAHPPKVQKVIHKKINKKEKKLALCSAIAATAS 129
Query: 439 XXXXQARGHIIEKIPELPLVVAD 507
RGHII+ I ELP+V++D
Sbjct: 130 KSTVAGRGHIIDGI-ELPIVISD 151
>UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr13 scaffold_48, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 131
Score = 37.9 bits (84), Expect = 0.24
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -3
Query: 353 VGANIRPPRHMLPKAP*P 300
VGANI PPRHMLPKAP P
Sbjct: 107 VGANILPPRHMLPKAPWP 124
>UniRef50_Q9UFE2 Cluster: Putative uncharacterized protein
DKFZp434E026; n=1; Homo sapiens|Rep: Putative
uncharacterized protein DKFZp434E026 - Homo sapiens
(Human)
Length = 158
Score = 37.1 bits (82), Expect = 0.41
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -2
Query: 456 SLNERWDASSSNGCCQGRSPLSEVDATVPAPPGL 355
+L +W S+G C G SPLS A PAPPGL
Sbjct: 106 ALPGKWHLLLSSGLCGGNSPLSGNGAVCPAPPGL 139
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 35.9 bits (79), Expect = 0.95
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 77 EE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 253
+E G + LP +F+ P+R DL+ +S QP AG +TSA S G GR
Sbjct: 20 DERGGEKDSVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGR 78
Score = 35.9 bits (79), Expect = 0.95
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 501 SRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 668
S + +I+ ++A L + + D+L+ + +R AGKGKMR RR K L +
Sbjct: 157 SSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFV 212
>UniRef50_Q5NB71 Cluster: Putative uncharacterized protein
P0431F01.18; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0431F01.18 - Oryza sativa subsp. japonica (Rice)
Length = 320
Score = 35.5 bits (78), Expect = 1.3
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 259 ARIPRVRGGGTHRSGQGAFGNMCRGG 336
AR PR GGG HR GA G + RGG
Sbjct: 201 ARRPRAAGGGKHRGAHGANGGVARGG 226
>UniRef50_Q4BUU0 Cluster: Putative uncharacterized protein; n=1;
Crocosphaera watsonii WH 8501|Rep: Putative
uncharacterized protein - Crocosphaera watsonii
Length = 285
Score = 35.1 bits (77), Expect = 1.7
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +1
Query: 169 YVQELEAAL--LREQGGWSPNQCRIMGYRTCVARIPRVRG 282
Y QE + +L LRE+ WSPN+ R + + + + R+P+ RG
Sbjct: 202 YSQEAQQSLEKLREKLEWSPNKIRDIAFNSSLCRLPKFRG 241
>UniRef50_A6NR78 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 448
Score = 35.1 bits (77), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 331 HDTCYRRHPDRTYGYHHHGHAEFGQHTS 248
HD C+ H + +G+HHH HA G S
Sbjct: 109 HDHCHEHHHEHEHGHHHHHHASPGHIAS 136
>UniRef50_Q52PH1 Cluster: Golden2-like transcription factor; n=8;
Poaceae|Rep: Golden2-like transcription factor - Zea
mays (Maize)
Length = 469
Score = 33.5 bits (73), Expect = 5.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 332 PRHMLPKAP*PDLWVPPPR 276
PRH+ P+AP P W PPP+
Sbjct: 325 PRHLAPRAPPPPPWAPPPQ 343
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 33.5 bits (73), Expect = 5.1
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +2
Query: 95 GSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK-------EAGHQTSAESWGTGR 253
G A LP VF IR DL+ ++ N RQ Y + +AG + S E WG GR
Sbjct: 45 GKAVTLPDVFSGEIREDLIRRAVLASRANRRQSYGHREHDGKRKPQAGMKHSVEWWGKGR 104
>UniRef50_UPI0000E23B66 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Pan troglodytes|Rep: PREDICTED:
hypothetical protein, partial - Pan troglodytes
Length = 366
Score = 33.1 bits (72), Expect = 6.7
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 199 REQGGWSPNQCRIMGYRTCVARIPRVRGGGT-HRSGQGAFGNMCRGGRMFAPTKPWR 366
R QGG P + G + +A + RGGG RSG+G+ C G + P PWR
Sbjct: 244 RRQGGKKPQKAAAAGGQKALAAGAKSRGGGAKSRSGRGS--KRCGGQK---PLAPWR 295
>UniRef50_UPI00015B4B32 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 1628
Score = 32.7 bits (71), Expect = 8.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 316 RRHPDRTYGYHHHGHAEFGQH 254
R PD +G+HHHGH G H
Sbjct: 181 RGAPDTRHGHHHHGHHNHGHH 201
>UniRef50_UPI0000F212F9 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 194
Score = 32.7 bits (71), Expect = 8.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 334 HHDTCYRRHPDRTYGYHHHGHAEFG 260
HH + RH DR +G HHHG G
Sbjct: 132 HHTRHHTRHHDRHHGRHHHGRHHHG 156
>UniRef50_Q2S0X7 Cluster: Sensor protein; n=1; Salinibacter ruber
DSM 13855|Rep: Sensor protein - Salinibacter ruber
(strain DSM 13855)
Length = 942
Score = 32.7 bits (71), Expect = 8.8
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 362 GGAGTVASTSDSGERPWQQPLLLLASQRSFRLEDTLL 472
GG GTV +T +G RP PL+LLAS + + +T+L
Sbjct: 146 GGGGTVLATL-TGPRPETSPLILLASMGTIAVVETVL 181
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,960,540
Number of Sequences: 1657284
Number of extensions: 14650014
Number of successful extensions: 47252
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 43745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46990
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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