Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1668
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   101   7e-23
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   101   7e-23
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   5.9  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    25   7.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (243), Expect = 7e-23
 Identities = 49/89 (55%), Positives = 53/89 (59%)
 Frame = +1

Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
           G    +ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127

Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVAD 507
                      ARGH IE+IPE+PLVV D
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDD 156



 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 40/67 (59%), Positives = 51/67 (76%)
 Frame = +2

Query: 59  SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 238
           +V ++ ++   +     LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAES
Sbjct: 7   TVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAES 66

Query: 239 WGTGRVL 259
           WGTGR L
Sbjct: 67  WGTGRAL 73



 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 34/62 (54%), Positives = 50/62 (80%)
 Frame = +3

Query: 510 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 689
           VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+
Sbjct: 158 VQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGI 217

Query: 690 TR 695
            +
Sbjct: 218 VK 219


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (243), Expect = 7e-23
 Identities = 49/89 (55%), Positives = 53/89 (59%)
 Frame = +1

Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
           G    +ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127

Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVAD 507
                      ARGH IE+IPE+PLVV D
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDD 156



 Score = 91.9 bits (218), Expect = 8e-20
 Identities = 40/67 (59%), Positives = 51/67 (76%)
 Frame = +2

Query: 59  SVGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 238
           +V ++ ++   +     LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAES
Sbjct: 7   TVSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAES 66

Query: 239 WGTGRVL 259
           WGTGR L
Sbjct: 67  WGTGRAL 73



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 34/62 (54%), Positives = 50/62 (80%)
 Frame = +3

Query: 510 VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 689
           VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+
Sbjct: 158 VQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGI 217

Query: 690 TR 695
            +
Sbjct: 218 VK 219


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 112 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 207
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 554 PQEDDSLFGLVDLLDLSATTKGSSGIFSIM 465
           P E+     L DL+ +SA T    G+FS +
Sbjct: 186 PAEEPKKLSLADLILISANTDREDGLFSTL 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,096
Number of Sequences: 5004
Number of extensions: 52655
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)