Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1668
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 106 1e-23
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 105 4e-23
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.16
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 31 1.2
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 31 1.2
06_03_1150 + 28022633-28023374,28023501-28023565 31 1.2
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 30 2.0
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 30 2.0
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 3.5
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067 29 4.7
04_04_1404 + 33302080-33303341,33303435-33305307 29 4.7
10_07_0029 + 12031711-12032464,12044289-12044386 28 6.2
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 28 8.1
10_01_0015 - 187905-188432 28 8.1
07_01_0469 - 3552409-3553368 28 8.1
06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243... 28 8.1
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563... 28 8.1
04_01_0244 - 3194141-3195091,3195301-3195312 28 8.1
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 28 8.1
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 106 bits (255), Expect = 1e-23
Identities = 49/91 (53%), Positives = 56/91 (61%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G V+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 72 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASA 131
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVADKS 513
ARGH IE +PELPLV++D +
Sbjct: 132 LAATSVPSLVLARGHRIETVPELPLVISDSA 162
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/54 (62%), Positives = 41/54 (75%)
Frame = +2
Query: 98 SAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
S+ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGR +
Sbjct: 24 SSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAV 77
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +3
Query: 501 SRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 680
S + I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKGPLI++ +
Sbjct: 159 SDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTE 218
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 105 bits (251), Expect = 4e-23
Identities = 50/89 (56%), Positives = 54/89 (60%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G V+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 71 GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASA 130
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVAD 507
ARGH IE +PE PLVV+D
Sbjct: 131 LAATAVPSLVLARGHRIEGVPEFPLVVSD 159
Score = 73.3 bits (172), Expect = 2e-13
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = +2
Query: 110 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVL 259
+P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGR +
Sbjct: 27 MPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAV 76
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +3
Query: 501 SRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 680
S ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKGPLI++ +
Sbjct: 158 SDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTE 217
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 335 PPRHMLPKAP*PDLWVPPP 279
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 316 RRHPDRTYGYHHHGHAEFGQHTSGTP*FGTG 224
R H D +G+HHH H H G G+G
Sbjct: 68 RAHGDHHHGHHHHHHGHGHSHHHGPEVHGSG 98
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 356 SPGGAGTVASTSDSGER-PWQQPLLLLASQRSFRLEDTLLKRFPSFPWL*PTSPGDQQDQ 532
S GG G ++ SG R P+ PL A + FP+FP+ P+SP Q
Sbjct: 86 SSGGGGAAPPSAGSGFRFPFPLPLPFPAPASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQ 145
Query: 533 TGCHLPEAP 559
P AP
Sbjct: 146 ASPASPAAP 154
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 356 SPGGAGTVASTSDSGER-PWQQPLLLLASQRSFRLEDTLLKRFPSFPWL*PTSPGDQQDQ 532
S GG G ++ SG R P+ PL A + FP+FP+ P+SP Q
Sbjct: 86 SSGGGGAAPPSAGSGFRFPFPLPLPFPAPASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQ 145
Query: 533 TGCHLPEAP 559
P AP
Sbjct: 146 ASPASPAAP 154
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -2
Query: 513 GLVGYNQGKLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPPGLR 352
G+VG N+ K G F + S L++ S G CQG S +T P P L+
Sbjct: 978 GVVGINK-KNGPSFYSAISKLSQLESLSVCAGWCQGLHGTSSSSSTSPPPENLQ 1030
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 199 REQGGWSPNQCRIMGYRTCVARIPRVRGGGT--HRSGQGAF 315
R + GW +Q ++ + R P +GGG R GQG F
Sbjct: 1121 RREQGWDAHQAQVGAQHQNLPRFPPQQGGGNIGERQGQGQF 1161
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 483 RASLG-CSRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 659
RA++G C R Q +N + ++ + L ++S+ LK + GKG N + P
Sbjct: 1509 RAAIGLCQRNSQRLNPEESQSLWFQLLDSFSEPLKKLYGSKDVNGKGVRSNGSETSNRQP 1568
Query: 660 LIIFNKDQGLTR 695
KD+G +R
Sbjct: 1569 -----KDKGFSR 1575
>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
Length = 472
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = -3
Query: 671 EDYEGSLTL--DTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDD 540
ED +GS+ + DTT++ + +L++ ++L LV +K ++P L E+D
Sbjct: 236 EDCKGSVIVSCDTTSMYYKSLSTLQSLLLVCVKKLQPKLVVTIEED 281
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 503 PTSPGDQQDQTG 538
PTSPGD QDQTG
Sbjct: 538 PTSPGDAQDQTG 549
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 340 YVHHDTCYRRHPDRTYG 290
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRYHPRRANG 110
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 86 DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 238
D SA+ K ++ D N++ + SK R VSK H SAES
Sbjct: 67 DSFVSAEETTIGNKRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>10_01_0015 - 187905-188432
Length = 175
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 238 MGYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGR 339
+ +RT R R RGG RS +G G CR GR
Sbjct: 82 VAWRTASTRSERWRGGRRRRS-EGRRGGRCRRGR 114
>07_01_0469 - 3552409-3553368
Length = 319
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 340 YVHHDTCYRRHPDRTYG 290
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRFHPRRASG 110
>06_03_1222 -
28521799-28521900,28521952-28522029,28522292-28524335,
28525188-28525303
Length = 779
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 129 ALNTNGRGLADPAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPK 1
ALN + PS +N+P+L + L + S+ FS +IPP+
Sbjct: 189 ALNASNNSFTGQIPSSICINSPSLAI-LDL-SYNQFSGSIPPE 229
>05_05_0285 -
23855219-23855371,23855391-23856063,23856239-23856301,
23856478-23856604,23856751-23856897,23856968-23856974,
23857203-23857379
Length = 448
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 360 LAALAPSRQPPTAESGLGSSRCCYWRPSARS 452
+A AP AESG+G+ C +WR S S
Sbjct: 306 IAKDAPPAVEVKAESGVGTLGCAFWRTSLGS 336
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 340 YVHHDTCYRRHPDRTYG 290
Y+ HDT YR HP R G
Sbjct: 98 YIFHDTAYRFHPRRANG 114
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 469 IEKIPELPLVVADKSRRSTRPNRLSS 546
I+ +PE+PL V D S R++R LSS
Sbjct: 431 IDFLPEVPLSVGDDSNRASRSADLSS 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,774,564
Number of Sequences: 37544
Number of extensions: 455502
Number of successful extensions: 1673
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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