Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1668
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               111   7e-25
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 29   4.8  
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)                      29   4.8  
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)                   28   6.3  
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)                28   6.3  
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_21126| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)                  28   8.3  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   8.3  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  111 bits (266), Expect = 7e-25
 Identities = 53/96 (55%), Positives = 58/96 (60%)
 Frame = +1

Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
           G    VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH               
Sbjct: 65  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSA 124

Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVADKSRRSTR 528
                      ARGH IEKI E+PLV++D     T+
Sbjct: 125 LAASALPALIMARGHRIEKIAEVPLVISDAIESVTK 160



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 43/66 (65%), Positives = 50/66 (75%)
 Frame = +2

Query: 62  VGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 241
           + VF E  + AG    LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESW
Sbjct: 6   ITVFNENGESAGQTT-LPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESW 64

Query: 242 GTGRVL 259
           GTGR +
Sbjct: 65  GTGRAV 70



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 35/72 (48%), Positives = 48/72 (66%)
 Frame = +3

Query: 474 KDSRASLGCSRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 653
           K +   L  S  ++ + KT  AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + RK
Sbjct: 143 KIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRK 202

Query: 654 GPLIIFNKDQGL 689
           GPLII+N DQGL
Sbjct: 203 GPLIIYNNDQGL 214


>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 335 PPRHMLPKAP*PDLWVPPPRTRGIRATHVRYPMIRHWFGDQPP 207
           PP+ ++   P P L V P   RG+  TH+R+ M     G++PP
Sbjct: 312 PPQPLMAAQPVPPLNVEP---RGLHMTHMRHAMAIGERGEKPP 351


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 343 TYVHHDTCYRRHPDRTYGYHHHGHA 269
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 334 HHDTCYRRHPDRTYGYHHHGHAEFGQH 254
           HH   + RH  R + YHHH +     H
Sbjct: 570 HHHLHHHRHHHRHHHYHHHHYPHHHHH 596


>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
          Length = 992

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = -1

Query: 202 HAVGLPRVLGHRNVNIIDQVRTYGRLEYEREGLG*PCTVSLFSEYTDTKGRATDRLISLL 23
           HA G+PR+ G R      +  T  RL YER      C  ++    +  +G + DR+ S  
Sbjct: 353 HACGVPRMRGQRLRR--RRFGTEIRLPYERVSYRGCCGTAIERGSSTDRGHSADRVASEA 410

Query: 22  *RSYTS 5
              YTS
Sbjct: 411 CHPYTS 416


>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
          Length = 304

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 340 YVHHDTCYRRHPDRTYGYHHHGHAEFGQHTSGTP*FGTGLVTSLL 206
           Y HH   +  H    + +HHH H      T  T    T ++T+++
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRHHHHSFTTIATTTVITTIITTVI 202


>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
          Length = 325

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 340 YVHHDTCYRRH-PDRTYGYHHHGHAEFGQH 254
           Y HH   Y  H P   Y +HHH H  + QH
Sbjct: 297 YHHHHPPYHYHYPPLPYRHHHH-HNRYQQH 325


>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 137 RPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRVLPEF 268
           RP  +++VH ++  +     C+S   GHQ S E  G G  L EF
Sbjct: 199 RPAEISEVH-ALHIHHMCENCLSSFTGHQASHEVGGEGGELDEF 241


>SB_21126| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)
          Length = 195

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 460 GHIIEKIPELPLVVADKSRRSTRPNRLSSS*GASRHG 570
           G +  K P LP   + KSR++ R   LSS    SR G
Sbjct: 152 GLVCSKAPSLPRTSSSKSRKTGRKATLSSRLFGSRRG 188


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 689 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 597
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 340 YVHHDTCYRRHPDRTYGYHHHGHAEFGQH 254
           Y HH  CY RH    + Y HH H    +H
Sbjct: 25  YCHHRYCYYRHHHYCW-YRHHYHYPCYRH 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,361,171
Number of Sequences: 59808
Number of extensions: 461996
Number of successful extensions: 1516
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)