Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1668
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 106 1e-23
U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chr... 30 1.8
AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like p... 30 1.8
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 28 5.5
U21320-3|AAA62532.1| 436|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 28 5.5
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z66516-7|CAA91362.2| 494|Caenorhabditis elegans Hypothetical pr... 28 7.3
U81043-1|AAC47486.1| 494|Caenorhabditis elegans MEX-1 protein. 28 7.3
AL023828-30|CAA19470.2| 494|Caenorhabditis elegans Hypothetical... 28 7.3
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 9.7
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 106 bits (255), Expect = 1e-23
Identities = 50/90 (55%), Positives = 57/90 (63%)
Frame = +1
Query: 241 GYRTCVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 420
G VARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126
Query: 421 XXXXXXXXXXQARGHIIEKIPELPLVVADK 510
QARGH+I+++ E+PLVV+DK
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDK 156
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = +3
Query: 501 SRQVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 680
S +V+ KTK+AV+FLRR W+DI KVY S+R RAGKGK+RNR+ Q+ GP++I+ +D
Sbjct: 154 SDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQD 213
Query: 681 QGLTR 695
R
Sbjct: 214 AECAR 218
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/66 (46%), Positives = 43/66 (65%)
Frame = +2
Query: 62 VGVFREE*DGAGSAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 241
V V+ E+ + S LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q SAESW
Sbjct: 7 VTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66
Query: 242 GTGRVL 259
GTGR +
Sbjct: 67 GTGRAV 72
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 48 ARPLVSVYSEKSETVQGQ 101
ARPLV+VY EK E Q Q
Sbjct: 3 ARPLVTVYDEKYEATQSQ 20
>U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 344 NIRPPRHMLPKAP*PDLWVPPPRTRGIR-ATHVRYPMIRHWFGDQP 210
N RP H K L P G+R +T VR +R W G+QP
Sbjct: 743 NRRPRTHRGMKLKEHQLMKPEDAPDGVRRSTRVRVKPVRSWLGEQP 788
>AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like
protein HCP-4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 344 NIRPPRHMLPKAP*PDLWVPPPRTRGIR-ATHVRYPMIRHWFGDQP 210
N RP H K L P G+R +T VR +R W G+QP
Sbjct: 743 NRRPRTHRGMKLKEHQLMKPEDAPDGVRRSTRVRVKPVRSWLGEQP 788
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 510 VQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFNKD 680
V E+ KTK VI + LKA ++ +K K + R++A K M + P F+KD
Sbjct: 417 VTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFSKD 474
>U21320-3|AAA62532.1| 436|Caenorhabditis elegans Hypothetical
protein K04G7.4a protein.
Length = 436
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 158 VHVSMSKNSRQPY---CVSKEAGHQTSAESWGTGRVLPE 265
+HV + + PY ++K HQ +W TG LPE
Sbjct: 360 LHVMRKEVLKSPYGYGYIAKNGDHQAGLNAWHTGHHLPE 398
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 510 VQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFNKD 680
V E+ KTK VI + LKA ++ +K K + R++A K M + P F+KD
Sbjct: 417 VTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFSKD 474
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 504 GYNQGKLGNL-FNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 364
GY G + N+ N VS+ + + ++AS+S G G S +E+D P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660
>Z66516-7|CAA91362.2| 494|Caenorhabditis elegans Hypothetical
protein W03C9.7 protein.
Length = 494
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 307 PDRTYGYHHHGHAEFGQHTSGTP*FGTGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTYGR 128
P R+ +H+H H +H P TG ++SL+ A + + + +RTYG
Sbjct: 330 PKRSDNHHYHHHHHQRRHIPAPP--STGPLSSLIDQADYEASMASGKMFGKPENIRTYGA 387
Query: 127 L 125
+
Sbjct: 388 M 388
>U81043-1|AAC47486.1| 494|Caenorhabditis elegans MEX-1 protein.
Length = 494
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 307 PDRTYGYHHHGHAEFGQHTSGTP*FGTGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTYGR 128
P R+ +H+H H +H P TG ++SL+ A + + + +RTYG
Sbjct: 330 PKRSDNHHYHHHHHQRRHIPAPP--STGPLSSLIDQADYEASMASGKMFGKPENIRTYGA 387
Query: 127 L 125
+
Sbjct: 388 M 388
>AL023828-30|CAA19470.2| 494|Caenorhabditis elegans Hypothetical
protein W03C9.7 protein.
Length = 494
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 307 PDRTYGYHHHGHAEFGQHTSGTP*FGTGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTYGR 128
P R+ +H+H H +H P TG ++SL+ A + + + +RTYG
Sbjct: 330 PKRSDNHHYHHHHHQRRHIPAPP--STGPLSSLIDQADYEASMASGKMFGKPENIRTYGA 387
Query: 127 L 125
+
Sbjct: 388 M 388
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 334 HHDTCYRRHPDRTYGYHHHGHAEFGQH 254
HHD +++H + + HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHH 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,168
Number of Sequences: 27780
Number of extensions: 324079
Number of successful extensions: 1071
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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