Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1667
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 37 0.002
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 29 0.79
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 27 3.2
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 5.6
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 7.4
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 25 7.4
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.4
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 25 9.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 9.7
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 9.7
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.7
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 335 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDR 442
G++ YNF +P P S E + G+VRY ++ T++R
Sbjct: 273 GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 28.7 bits (61), Expect = 0.79
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 335 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKF 454
G+++YNF + P S + + G V Y ++ +DR F
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTF 230
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 649 PFSK-VLLDLDSNQIQEPAHPLLKVVMRSKNS 557
PF K +LLDL +++E HP L R++ S
Sbjct: 467 PFLKSILLDLIQGRLKETTHPFLNSETRAQTS 498
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 135 QKHIRSFHSLFVLHNMYSIDYPNRY 61
+KH+++ HSL++ Y +D P+ +
Sbjct: 224 KKHMKASHSLYIPEREYLVDEPSLF 248
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 495 WI*ISSILQGTNPHSIRKDVLLFLLRITTFSSGCAG 602
WI S+L GT+ + I ++ L+R F S G
Sbjct: 302 WILSKSLLSGTDAYQIEREQAFRLIRTLYFLSSTEG 337
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 396 PSKDEGRTGGNVQVKLYMCFPCGISISFP 310
P +E + G V+LY C CG + FP
Sbjct: 119 PPNEEEKWNGVRNVELYQCNVCGHNQRFP 147
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 446 WKFDQETKMAFTVINALDLNLIHLTRNQSTFN 541
WK K TV N D++L+H+ R + F+
Sbjct: 11 WKKYFSNKKKPTVKNTSDIDLLHINRGRQPFD 42
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 87 TYYAGQTVNGRI-EYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGK 233
T Y + +GR+ +V D P V H+K KG+ S E QG+
Sbjct: 199 TKYLKEKSDGRVASFVADPPGSVLYSHIKTKGKHPDNKGSSFTEGIGQGR 248
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 71 G*SMEYILCRTNSEWKDRI 127
G S++YI C N WK++I
Sbjct: 115 GISLKYIPCAINCHWKNKI 133
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 9.7
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = +3
Query: 297 WEVIQGMKLKYHKGNTYII 353
W+ + G K++ HKG+ ++
Sbjct: 120 WDAVSGQKIRKHKGHAGVV 138
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 503 SNPMHLLL*MPSWFPDQISMVCLML 429
SN + L +P+W+P + ++VCL+L
Sbjct: 71 SNLVIYALRVPNWWPCKTTVVCLIL 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,958
Number of Sequences: 5004
Number of extensions: 65270
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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