Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1667
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0129 + 7055896-7056135,7056404-7056771,7056816-7056928,705... 34 0.088
07_03_0393 - 17630097-17630367,17630483-17630709 30 1.4
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 29 3.3
12_01_0384 + 3012359-3012404,3012641-3012825,3013014-3013045,301... 29 4.4
02_02_0125 - 7026037-7027377 28 5.8
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708... 28 5.8
08_01_0298 - 2406254-2406322,2406444-2406541,2408652-2408769,240... 28 7.6
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 28 7.6
>02_02_0129 +
7055896-7056135,7056404-7056771,7056816-7056928,
7057014-7057118,7057283-7057860,7057889-7058346,
7058430-7058681,7058762-7058872,7058960-7059020,
7059122-7059214,7059292-7059477
Length = 854
Score = 34.3 bits (75), Expect = 0.088
Identities = 27/74 (36%), Positives = 39/74 (52%)
Frame = +3
Query: 57 ANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGKT 236
ANI NQWN + T+ E + S +K+RGI + KG A + +EE A G
Sbjct: 178 ANI-TPNQWNDFL---TLKNWPEEIKRS-QKLRGI--RTKGGAVNKRGGGNEEEGATGTN 230
Query: 237 ESTDTMIQEMKNIS 278
DT I+E++N+S
Sbjct: 231 GGVDTEIKELENLS 244
>07_03_0393 - 17630097-17630367,17630483-17630709
Length = 165
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 571 ASPPLAVDVQAPVSGYCPGQVIPLKMDLG 657
+ P L D +P+ C G+V+P+K++LG
Sbjct: 105 SDPNLGADNASPLLSDCTGEVVPVKVELG 133
>05_05_0357 +
24377989-24378039,24378601-24378632,24378724-24378818,
24379165-24379237,24379804-24379867,24380465-24380732,
24381132-24381202,24382028-24382084,24382302-24382403,
24382544-24382588,24383616-24383693,24384350-24384400,
24384475-24384556,24384883-24384956,24386093-24386144,
24386230-24386288,24386380-24386456,24386692-24386778,
24387011-24387101
Length = 502
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 424 DSVSDITMFPFKR*RQDRWQCAGKIIYVFPLWYF 323
DSV+ I+ +PF R R +CA +I +F LW++
Sbjct: 149 DSVAQISFYPFIRNDIIRTKCANVLISMF-LWFY 181
>12_01_0384 +
3012359-3012404,3012641-3012825,3013014-3013045,
3013387-3013514,3013695-3013940,3014200-3014284,
3014369-3014387,3014563-3014667
Length = 281
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 463 NQDGIYSNKCIGFESHPSYKEPIHIQLEKTFCCFCCASP 579
NQD Y + +G S + QL+K C+CC +P
Sbjct: 205 NQDLPYDSASMGIILQRSEDNLVQGQLKKCITCYCCWNP 243
>02_02_0125 - 7026037-7027377
Length = 446
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 114 GRIEYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGKTESTDTMIQ 260
G++ VF+ + V GI+ KI+ + L E+ E G+ T +Q
Sbjct: 366 GQVGMVFELCRNVAGIYRKIQEDIEANLEEADVERRENGEVFETKVALQ 414
>01_01_0898 +
7078900-7079079,7080269-7080301,7080480-7080653,
7080866-7083890,7084253-7084596
Length = 1251
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 534 HSIRKDVLLFLLRITTFSSGCAGSCIWLLSR 626
HS + L FLL + T + GC CI+L+ R
Sbjct: 901 HSNSRHFLRFLLPVVTVAFGCMVICIFLMIR 931
>08_01_0298 -
2406254-2406322,2406444-2406541,2408652-2408769,
2408890-2408980,2409243-2409406,2410027-2410242,
2410405-2410475,2410552-2410619,2412027-2412166
Length = 344
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/78 (24%), Positives = 29/78 (37%)
Frame = +3
Query: 75 NQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGKTESTDTM 254
N W++ G + I + PK I K H E E +E Q D+
Sbjct: 228 NSWHSDIVGWRTSS-IRRKTELPKWEESISEKYPHIVHEEYSEELGDETCQNSATVCDSD 286
Query: 255 IQEMKNISRFLTIYWEVI 308
I E K ++ + WE +
Sbjct: 287 ILEEKMVTGLRRVSWEKV 304
>01_01_1096 -
8659091-8659459,8660730-8661050,8661416-8661694,
8661781-8661897,8662142-8662210,8663204-8663397,
8663552-8663633
Length = 476
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 317 EIEIPQGKHIYNFTCT--LPPVLPSSFEGEHGYVRYTVKVTLDRP 445
E+ P+ ++ N C P P ++ ++GY RY V D P
Sbjct: 335 ELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,986,512
Number of Sequences: 37544
Number of extensions: 387323
Number of successful extensions: 919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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