Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1666
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    37   0.002
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    29   0.86 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   4.6  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   6.0  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   8.0  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   8.0  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 335 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDR 442
           G++ YNF   +P   P S E + G+VRY ++ T++R
Sbjct: 273 GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 335 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKF 454
           G+++YNF   +    P S + + G V Y ++  +DR   F
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTF 230


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 520 KEPIHIQLEKTFCCFCCASPPLAVDVQAPVSGYCPGQVIPLKIDIEIRAMSNF 678
           ++ I  +   TFC  C      A      V+  CP   IPL ID+   A+ +F
Sbjct: 719 QDAIESRCHHTFCRLCVTEYINAAGDGENVN--CPSCFIPLSIDLSAPALEDF 769


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 135 QKHIRSFHSLFVLHNMYSIDYPNRY 61
           +KH+++ HSL++    Y +D P+ +
Sbjct: 224 KKHMKASHSLYIPEREYLVDEPSLF 248


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 495 WI*ISSILQGTNPHSIRKDVLLFLLRITTFSSGCAG 602
           WI   S+L GT+ + I ++    L+R   F S   G
Sbjct: 302 WILSKSLLSGTDAYQIEREQAFRLIRTLYFLSSTEG 337


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 396 PSKDEGRTGGNVQVKLYMCFPCGISISFP 310
           P  +E +  G   V+LY C  CG +  FP
Sbjct: 119 PPNEEEKWNGVRNVELYQCNVCGHNQRFP 147


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 446 WKFDQETKMAFTVINALDLNLIHLTRNQSTFN 541
           WK     K   TV N  D++L+H+ R +  F+
Sbjct: 11  WKKYFSNKKKPTVKNTSDIDLLHINRGRQPFD 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,874
Number of Sequences: 5004
Number of extensions: 69066
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)