Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1666
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30) 66 3e-11
SB_1624| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_46489| Best HMM Match : Lig_chan (HMM E-Value=0.072) 31 0.69
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 2.1
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 28 8.5
SB_14465| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Frame = +2
Query: 329 PQGKHIYNFTCTLPPV-LPSSFEGEHGYVRYTVKVTLDRPWKFDQETKMAFTVINALDLN 505
P G++ Y F+ +P LP+SFEG G+VRY +K +DRPW+FD TK AF++I +D+N
Sbjct: 96 PPGEYSYPFSFIIPQQNLPTSFEGNFGHVRYWLKAIIDRPWRFDVTTKAAFSMIEFVDIN 155
Query: 506 LIHLTRN 526
+ L N
Sbjct: 156 TVMLMGN 162
Score = 34.7 bits (76), Expect = 0.074
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +3
Query: 63 IYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGKTES 242
I L + +Y G+ +NG + + K RGI ++ GEA+ ES + G
Sbjct: 9 ITLTGEKRVFYPGEVLNGSVYLKLNKELKTRGIRLEFHGEANVRWSES----SGSGNNRR 64
Query: 243 TDTMIQEMKNISRFLTIY 296
T T + I+ T+Y
Sbjct: 65 TRTYRNQEVYINTVATLY 82
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +2
Query: 335 GKHIYNFTCTLPPV-LPSSFEGEHGYVRYTVKVTLDRPWKFDQETKMAFTVINALDLN 505
G+H F+ +PP LPSSFE HG+VRY ++ + RPW+FD+ TK+ VI+ +D+N
Sbjct: 126 GRHALEFSFKIPPFSLPSSFESTHGHVRYYLRARISRPWRFDEVTKLQVHVIDLIDVN 183
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 511 PSYKEPIHIQLEKTFCCFCCASP-PLAVDVQAPVSGYCPGQVIPLKIDI 654
P P+ + +K C C + PL V S YCPG+ + L +I
Sbjct: 185 PRLLMPVFGEAQKALNCLCNGTAAPLHALVYTDRSAYCPGERLTLTTEI 233
>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
Length = 173
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +2
Query: 335 GKHIYNFTCTLPPV-LPSSFEGEHGYVRYTVKVTLDRPWKFDQETKMAFTVINALDLN 505
G+H F+ +PP LPSSFE HG+VRY ++ + RPW+FD+ TK+ VI+ +D+N
Sbjct: 111 GRHALEFSFKIPPFSLPSSFESTHGHVRYYLRARISRPWRFDEVTKLQVHVIDLIDVN 168
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 63 IYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHT 191
I L+ + Y+ G+ V+G K R +HV+ GEA T
Sbjct: 9 IVLNRKNRIYHPGEVVSGECVVYSKESLKFRSVHVEFHGEART 51
>SB_1624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Frame = +2
Query: 260 GNEEYFQISYYLLGSN--TGNEIEIPQGKHIYNFTCTLP--PVLPSSFEGEHGYVRYTVK 427
G +EY++ LL G + G++ Y F+ LP LP ++E +HGY++Y+++
Sbjct: 61 GKQEYYRHVAELLDKEKVAGMNGILKPGEYKYPFSFELPFDGDLPGTYEAKHGYIKYSLE 120
Query: 428 VTLDRPWKFDQETKMAFTVINALDLNLIHLTRNQSTFN 541
+DRP +T TVI+ ++++ L Q N
Sbjct: 121 ALIDRPLMTPAKTGTLITVIDYVEIDKTLLEPRQKQEN 158
>SB_46489| Best HMM Match : Lig_chan (HMM E-Value=0.072)
Length = 327
Score = 31.5 bits (68), Expect = 0.69
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 564 LLRITTFSSGCAGSCIWLLSRSSNTFE 644
++ +T +G AG CIWLL R+SN +
Sbjct: 55 VIGLTLILTGIAGICIWLLDRNSNPID 81
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 327 YHKGNTYIILPAHCHLSCLH-LLKGNMVMSDT 419
YHK ++PA+ ++SC H L +G +V DT
Sbjct: 1921 YHKAELARLVPAYAYISCKHSLQEGGIVEHDT 1952
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 631 LDLDSNQIQEPAHPLLKVVMRSKNSRTSFLIECGLVPCKMDEIQIQCIYYCK 476
L LD+ +I +L V++ T + E + K EI IQCIY C+
Sbjct: 1360 LVLDTAKIMPGRSYVLTVIVEKGKRSTRYEQEVDIARGKKLEILIQCIYNCR 1411
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 424 QSNIRQTMEI*SGNQDGIYSNKCIGFESHPSYKEPIHIQLEK 549
Q+ I Q + + S NQ + KC SH + +P+ +Q K
Sbjct: 1167 QNAITQPVTVPSHNQSQYHHTKCHHMTSHSTITQPVTVQSHK 1208
>SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 493 IGFESHPSYKEPIHIQLEKTFCCFCCASPPLAVDVQAPVSGYCP 624
I ++P Y+ H Q + C + SPP AV+V+ Y P
Sbjct: 3 ISLPAYPPYRYVYHTQRTRRRCTYITPSPP-AVEVRISHPAYSP 45
>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
Length = 1121
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +3
Query: 162 HVKIKGEAHTELYESKQEENAQGKTESTDTMIQEMKNISRFLTIYWEVIQGMKLKYHKGN 341
HV ++ EL + +QEE E + E + F +Y G+ L+Y
Sbjct: 62 HVVSSIDSLEELQQQQQEEERARLVEEANQRAAEERQKKPFQNLYITCPDGLHLEYFNDG 121
Query: 342 TY 347
TY
Sbjct: 122 TY 123
>SB_14465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 526 PIHIQLEKTFCCFCCASP-PLAVDVQAPVSGYCPGQVIPLKIDI 654
P+ + +K C C + PL V S YCPG+ + L +I
Sbjct: 2 PVFGEAQKALNCLCNGTAAPLHALVYTDRSAYCPGERLTLTTEI 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,062,697
Number of Sequences: 59808
Number of extensions: 480256
Number of successful extensions: 1159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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