Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1666
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s...    32   0.32 
At2g41790.1 68415.m05165 peptidase M16 family protein / insulina...    32   0.32 
At4g39180.1 68417.m05548 SEC14 cytosolic factor, putative / phos...    29   3.0  
At5g18410.2 68418.m02167 expressed protein similar to p53 induci...    29   4.0  
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    29   4.0  
At3g01250.1 68416.m00031 expressed protein                             28   5.2  
At1g80540.1 68414.m09441 expressed protein ; expression supporte...    28   5.2  
At4g39740.1 68417.m05626 electron transport SCO1/SenC family pro...    28   6.9  
At5g08030.1 68418.m00934 glycerophosphoryl diester phosphodieste...    27   9.2  
At3g42410.1 68416.m04385 replication protein-related weak simila...    27   9.2  

>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 504

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +2

Query: 326 IPQG-KHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRP--------WKFDQETKMAF 478
           + QG +H Y  TCT   +  + F+ E  Y+  TV   +  P        WKF    K   
Sbjct: 153 LKQGMRHSYVKTCTYIAIFDADFQPEPDYLERTVPFLIHNPELALVQARWKFVNAKKCLM 212

Query: 479 TVINALDLNLIHLTRNQST 535
           T +  + LN  H T  Q +
Sbjct: 213 TRMQEMSLN-YHFTAEQES 230


>At2g41790.1 68415.m05165 peptidase M16 family protein / insulinase
            family protein contains Pfam domain, PF05193: Peptidase
            M16 inactive domain; similar to insulin-degrading enzyme
            (Insulysin, Insulinase, Insulin protease) [Mouse]
            SWISS-PROT:Q9JHR7
          Length = 970

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +3

Query: 120  IEYVFDSPKKVRGIHVKIKGEA-----HTELYESKQEENAQGKTESTDTMIQEMKNISRF 284
            ++++  S  K  G H+  + E+      ++LYE   E+     T   D  +++ KN+   
Sbjct: 810  VQFIIQSSVKGPG-HIDSRVESLLKNFESKLYEMSNEDFKSNVTALIDMKLEKHKNLKEE 868

Query: 285  LTIYWEVIQGMKLKYHK 335
               YW  IQ   LK+++
Sbjct: 869  SRFYWREIQSGTLKFNR 885


>At4g39180.1 68417.m05548 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative
           phosphatidylinositol-phosphatidylcholine transfer
           protein SEC14, Yarrowia lipolytica, PIR2:S43745;
           contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam
           PF03765 : CRAL/TRIO, N-terminus
          Length = 554

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = +3

Query: 48  LKEANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKG-EAHTELYESKQE--E 218
           L EAN+Y       Y  G TV  + EY+    KK+  +  K K  EA    Y  +++  +
Sbjct: 449 LTEANVYSREGSAVYQDGVTVMSKQEYI-AMVKKITDLEEKCKSMEAQAAFYMEREKTLD 507

Query: 219 NAQGKTESTDTMIQEM-KNISRFLTIYWEVIQGMKLKYHKGNTYII 353
            A  + +  +  + E  K +   +T   E++  ++ K  K   +++
Sbjct: 508 AALRRIDQLELQLSETNKALDETMTRQHEIMAFIEKKKKKKRKFLL 553


>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1017

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 237 ESTDTMIQEMKNISRFLTIYWEVIQGMKLKYHKGNTY 347
           + TDTM +E+ ++  FL+  W ++  + ++  + N Y
Sbjct: 195 QDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNKY 231


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 237 ESTDTMIQEMKNISRFLTIYWEVIQGMKLKYHKGNTY 347
           + TDTM +E+ ++  FL+  W ++  + ++  + N Y
Sbjct: 195 QDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNKY 231


>At3g01250.1 68416.m00031 expressed protein
          Length = 164

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 168 KIKGEAHTELYESKQEENAQGKTESTDTMIQEMKNISR 281
           K+KGE  +EL +++++ N   + E    ++ E+K + +
Sbjct: 46  KLKGEKESELMQAEEKNNLLKEIEKAKKLLGELKTLKK 83


>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 435 NVTLTVYLT*PCSPSKDEGRTGGNVQVKLYMC 340
           NVT + Y+  PC+PS +  RT  N+ ++L +C
Sbjct: 88  NVTNSHYIAPPCNPSLNYLRTSNNL-IRLLIC 118


>At4g39740.1 68417.m05626 electron transport SCO1/SenC family
           protein similar to SP|P23833 SCO1 protein, mitochondrial
           precursor {Saccharomyces cerevisiae}; contains Pfam
           profile PF02630: SCO1/SenC
          Length = 276

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 592 PLLKVVMRSKNSRTSFLIECGLVPCKMDEIQIQCIYYCK 476
           P  ++V+  KN   SFL  CG  P K    +IQ + YCK
Sbjct: 3   PCRRLVLSCKNQAASFLRRCG--PSK----RIQSVNYCK 35


>At5g08030.1 68418.m00934 glycerophosphoryl diester
           phosphodiesterase family protein similar to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 372

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/78 (26%), Positives = 40/78 (51%)
 Frame = +3

Query: 36  KDMGLKEANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYESKQE 215
           K +G K+   + D Q+N  +   T +  I    D+P+ V GI+ +IK      ++ ++Q 
Sbjct: 135 KTLGAKQRYPFRDQQYNGKFPIITFDEYISIALDAPRVV-GIYPEIK----NPVFMNQQV 189

Query: 216 ENAQGKTESTDTMIQEMK 269
           + A GK +  D  ++ +K
Sbjct: 190 KWADGK-KFEDKFVETLK 206


>At3g42410.1 68416.m04385 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 474

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 81  WNTYYAGQTVNGRIEYVFDS--PKKVR 155
           WN Y   + V+G+I+Y F    P+K R
Sbjct: 251 WNAYGDDEVVDGKIDYTFSDVHPRKTR 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,258
Number of Sequences: 28952
Number of extensions: 349978
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)